Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40120 576 / 0 Protein kinase superfamily protein (.1) AT1G73450 517 / 2e-169 Protein kinase superfamily protein (.1) AT1G73460 517 / 2e-169 Protein kinase superfamily protein (.1) AT3G17750 515 / 6e-169 Protein kinase superfamily protein (.1) AT4G03175 197 / 2e-59 Protein kinase superfamily protein (.1) AT5G35980 194 / 2e-52 YAK1 yeast YAK1-related gene 1 (.1.2) AT3G25840 160 / 3e-41 Protein kinase superfamily protein (.1.2) AT1G13350 160 / 8e-41 Protein kinase superfamily protein (.1.2) AT3G53570 154 / 3e-40 AME2, AFC1 FUS3-complementing gene 1 (.1.2.3.4) AT4G32660 150 / 2e-39 AME3 Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G069000 [exp] 1238 / 0 AT2G40120 607 / 0.0 Protein kinase superfamily protein (.1) Potri.012G039700 [exp] 530 / 2e-174 AT1G73460 1343 / 0.0 Protein kinase superfamily protein (.1) Potri.015G033400 [exp] 520 / 9e-171 AT1G73460 1356 / 0.0 Protein kinase superfamily protein (.1) Potri.019G043400 [exp] 195 / 3e-52 AT5G35980 1088 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.013G075300 [exp] 195 / 4e-52 AT5G35980 1134 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.008G119100 [exp] 173 / 8e-45 AT3G25840 689 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G244400 [exp] 162 / 2e-43 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G126900 [exp] 168 / 4e-43 AT3G25840 727 / 0.0 Protein kinase superfamily protein (.1.2) Potri.016G079900 [exp] 153 / 3e-40 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028283 [exp] 767 / 0 AT2G40120 587 / 0.0 Protein kinase superfamily protein (.1) Lus10040203 [exp] 609 / 0 AT2G40120 590 / 0.0 Protein kinase superfamily protein (.1) Lus10031902 [exp] 522 / 1e-171 AT1G73450 1318 / 0.0 Protein kinase superfamily protein (.1) Lus10042297 [exp] 516 / 1e-168 AT1G73450 1335 / 0.0 Protein kinase superfamily protein (.1) Lus10026360 [exp] 498 / 7e-163 AT1G73460 680 / 0.0 Protein kinase superfamily protein (.1) Lus10031328 [exp] 276 / 2e-88 AT1G73450 405 / 6e-135 Protein kinase superfamily protein (.1) Lus10020366 [exp] 196 / 2e-52 AT5G35980 1159 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10009542 [exp] 196 / 3e-52 AT5G35980 1147 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10024431 [exp] 152 / 1e-39 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10025301 [exp] 151 / 3e-39 AT3G53570 726 / 0.0 FUS3-complementing gene 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.010G188400.4 pacid=42798849 polypeptide=Potri.010G188400.4.p locus=Potri.010G188400 ID=Potri.010G188400.4.v4.1 annot-version=v4.1 ATGGCGGGACCAGAAACAGAAACAGGACTCGCAGCCCCGGACGTGGAAGCAGTGTTGGATTTTCTACGCAAAAATGGGTTAAAGGACGCAGAGTTGGCTC TTAAAGAGGACATCAATGAGAGAAACACTGAATTGGGTTCCTTTGACTTTGAGAAGTTCTTGTTTGTCTTGCCACCCGTGAGGATTCCGGCGAATGGGCG GCAACTGGAGGTCGAAGGATTTGGCGGCGGTGGCGAGAGGTTGCAACCGAGTTCTGGGTCTCCGTCGGCCGATGAGTTTGTTAGCTTGGGGTCCTCTACT ACTGCCAGCGGTGTGTACTCTTCAGAGTTCTCAAATCCATATGGACTTCATTCTGCATCTCAGGCTAATTCAAAAACTTCATCTGATAGGCTGTCTCAGT TTGGCACAGCACGTGATTACCGTGATTTTGATTTGCAAAATGACTTTTGTTGGTATGATGAGAAAGAGGAAGGCCACTTCATGACTCCCTGCTTCAATGG GCCAGACTACTTTAGCTGTCCGAGTGAGGATAAGTTTGTCATGACATCAGAGACAGAGAAGCAGTTTGAAAACTACTTGGGTTTGTATGATAAATCTGAA GGTGAAACTGAAGGAACAGCTGGTTACTTGGATAAGCAGTGTCTTTTCAATGTCACGTCTGTGAATAATAAAAACAAGGCTCACTCAATGAGTTATTATC ATTTTGATAGAAGAAACCAGCTTGAAGGAGACATTGAGGGGGATGGTAGTTCAGCCTCCAATTGCAAATGCTGTGAAAAAACAGGAGGGACTTGCAGCAA GAATCCTGTTGACTGTATCTACTTGAGCTCTAAAGAAACTGATTTAGGTGATTTTCAGTTAAAAGGTGGGGAAGGCCTTGCTGATTATGATATAGCCCAT GTGCATATGGGAAACAAGAATGCTAATTACTATTGTAAAAAAGGTCTCAACAGTGACTGGATTGAAGGGTTTAAGAGTACCTCTGACATCATAGAAAATG TAATTGATGACTTTGAAGTCGGAGATGGTGGAGAAGTAAATGGAGAAGCCCGTGAGCTTGAGGCTGCTATAGGTGGAGAAGATGTTAATGCTGCCGAACT TTTGATGTACTATAACCAGGAGGATGAATATGAAGTATTCAATCTGCGAGTTATACACAGGAAAAACAGGACTGGATTTGAGGAAAACAAGGACCTGCCC ATTGTGCTAAATACTGTCATTGCAGGCAGATATTATGTCACGGAATACCTAGGTTCAGCTGCTTTCAGTAAGGTCATTCAGGCGCATGATCTTCACACAG GAATAGATGTTTGCCTGAAGATTATTAAAAATGACAAAGATTTTTTCGATCAGAGTCTAGATGAAATTAAACTTCTGAAGATAGTCAACAAGCATGATCC GGCGGATGAACGTCACATTTTGCGCCTTTATGACTACTTCTATCACCAAGAGCATCTCTTCATCGTTTGTGAACTCCTTAAGGCAAACTTGTATGAATTT CAGAAATTTAGTCAAGAATCAGATGGAAAAGCTTATTTCACTCTGAGCAGATTGCAGGTCATAACCCGTCAATGTTTGGAGGCACTGGAATACTTGCATC ACCTGGGAATTATTCACTGTGATTTAAAGCCTGAAAACATTCTTATAAAGAGTTATAGGAGATGTGAGATAAAGGTTATTGATCTTGGAAGCAGTTGCTT TAAGTCAGACAACTTGTGCCTATATGTTCAATCTCGTTCATATAGAGCCCCTGAAGTCATTCTAGGTCTCCCCTATGACCAGAAGATTGACTTATGGTCT CTTGGCTGCATCTTGGCTGAGCTGTGCTCTGGGGAAGTGCTATTTCCAAATGATGCCGTTGTAATGATCCTAGCACGCATGATTGGTATGCTGGGTCCTA TTCATTCAGAGATGTTGGTGATGGGACAGGAAACACACAAGTACTTTACAGAAGAATACGATCTGTATTATTCAAATGAGGAGACAAATCAAATAGAATA CCTTATTCCTGAGGAGTCCTCACTGGAGCATCATCTACAGATTTCTGATGTTGGATTCATTGATTTCATGAGAAACTTGCTTGAGCTCAATCCCCTGAGG CGACTAACTGCAAAGGAGGCACTAGAGCACCCATGGCTTTCACATTCTTACTGA
AA sequence Show only first row Show all	>Potri.010G188400.4 pacid=42798849 polypeptide=Potri.010G188400.4.p locus=Potri.010G188400 ID=Potri.010G188400.4.v4.1 annot-version=v4.1 MAGPETETGLAAPDVEAVLDFLRKNGLKDAELALKEDINERNTELGSFDFEKFLFVLPPVRIPANGRQLEVEGFGGGGERLQPSSGSPSADEFVSLGSST TASGVYSSEFSNPYGLHSASQANSKTSSDRLSQFGTARDYRDFDLQNDFCWYDEKEEGHFMTPCFNGPDYFSCPSEDKFVMTSETEKQFENYLGLYDKSE GETEGTAGYLDKQCLFNVTSVNNKNKAHSMSYYHFDRRNQLEGDIEGDGSSASNCKCCEKTGGTCSKNPVDCIYLSSKETDLGDFQLKGGEGLADYDIAH VHMGNKNANYYCKKGLNSDWIEGFKSTSDIIENVIDDFEVGDGGEVNGEARELEAAIGGEDVNAAELLMYYNQEDEYEVFNLRVIHRKNRTGFEENKDLP IVLNTVIAGRYYVTEYLGSAAFSKVIQAHDLHTGIDVCLKIIKNDKDFFDQSLDEIKLLKIVNKHDPADERHILRLYDYFYHQEHLFIVCELLKANLYEF QKFSQESDGKAYFTLSRLQVITRQCLEALEYLHHLGIIHCDLKPENILIKSYRRCEIKVIDLGSSCFKSDNLCLYVQSRSYRAPEVILGLPYDQKIDLWS LGCILAELCSGEVLFPNDAVVMILARMIGMLGPIHSEMLVMGQETHKYFTEEYDLYYSNEETNQIEYLIPEESSLEHHLQISDVGFIDFMRNLLELNPLR RLTAKEALEHPWLSHSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40120			Protein kinase superfamily pro...		Potri.010G188400 [exp]	0	1
AT2G34410		RWA3	REDUCED WALL ACETYLATION 3, O-...		Potri.001G352300 [exp]	1.00	0.9640
AT1G16860			Ubiquitin-specific protease fa...		Potri.010G252400 [exp]	1.41	0.9622
AT4G10840			Tetratricopeptide repeat (TPR)...		Potri.014G100400 [exp]	2.44	0.9494
AT1G29200			O-fucosyltransferase family pr...		Potri.011G068300 [exp]	3.46	0.9462
AT5G62580			ARM repeat superfamily protein...		Potri.015G069200 [exp]	4.89	0.9337
AT1G67510			Leucine-rich repeat protein ki...		Potri.010G058200 [exp]	5.74	0.9277
AT1G13180		ATARP3, DIS1	DISTORTED TRICHOMES 1, ARABIDO...		Potri.008G182700 [exp]	6.00	0.9398
AT2G40120			Protein kinase superfamily pro...		Potri.008G069000 [exp]	7.48	0.9206
AT1G16860			Ubiquitin-specific protease fa...		Potri.008G006000 [exp]	8.36	0.9397
AT1G16860			Ubiquitin-specific protease fa...		Potri.010G252500 [exp]	9.21	0.9453

Compare expression of checked genes

Potri.010G188400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.