Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55950 790 / 0 CCR3, ATCRR3 CRINKLY4 related 3 (.1) AT5G47850 345 / 6e-107 CCR4 CRINKLY4 related 4 (.1) AT3G59420 248 / 3e-70 ACR4 crinkly4 (.1) AT1G67720 213 / 8e-58 Leucine-rich repeat protein kinase family protein (.1) AT5G28680 202 / 3e-54 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT1G20650 191 / 9e-54 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT1G24030 190 / 1e-53 Protein kinase superfamily protein (.1.2) AT3G04690 200 / 2e-53 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT1G79620 199 / 5e-53 Leucine-rich repeat protein kinase family protein (.1) AT2G21480 198 / 8e-53 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G068700 [exp] 1216 / 0 AT3G55950 786 / 0.0 CRINKLY4 related 3 (.1) Potri.001G252400 [exp] 721 / 0 AT3G55950 692 / 0.0 CRINKLY4 related 3 (.1) Potri.019G078300 [exp] 389 / 4e-123 AT5G47850 699 / 0.0 CRINKLY4 related 4 (.1) Potri.013G103300 [exp] 311 / 6e-94 AT5G47850 649 / 0.0 CRINKLY4 related 4 (.1) Potri.007G128400 [exp] 241 / 2e-67 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.017G029900 [exp] 241 / 3e-67 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.010G052800 [exp] 210 / 8e-57 AT1G67720 1330 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G181200 [exp] 210 / 1e-56 AT1G67720 1339 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G096400 [exp] 199 / 4e-56 AT3G51550 451 / 6e-151 FERONIA, Malectin/receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028285 [exp] 709 / 0 AT3G55950 734 / 0.0 CRINKLY4 related 3 (.1) Lus10040663 [exp] 606 / 0 AT3G55950 642 / 0.0 CRINKLY4 related 3 (.1) Lus10018242 [exp] 605 / 0 AT3G55950 632 / 0.0 CRINKLY4 related 3 (.1) Lus10029170 [exp] 384 / 2e-121 AT5G47850 678 / 0.0 CRINKLY4 related 4 (.1) Lus10040201 [exp] 322 / 2e-100 AT3G55950 359 / 8e-115 CRINKLY4 related 3 (.1) Lus10012995 [exp] 289 / 1e-91 AT5G47850 372 / 9e-125 CRINKLY4 related 4 (.1) Lus10015956 [exp] 236 / 6e-66 AT3G59420 1258 / 0.0 crinkly4 (.1) Lus10000764 [exp] 235 / 2e-65 AT3G59420 1255 / 0.0 crinkly4 (.1) Lus10003942 [exp] 213 / 5e-58 AT3G51550 656 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10021003 [exp] 202 / 1e-56 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0186 [poplar] [flax] Beta_propeller PF13540 [poplar] [flax] RCC1_2 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Potri.010G188600.1 pacid=42797907 polypeptide=Potri.010G188600.1.p locus=Potri.010G188600 ID=Potri.010G188600.1.v4.1 annot-version=v4.1 ATGACGAAACTACCCTTCTCCTCCGTCACCCTCTTCGCTACCACCCTCACACTCCTCTCCTTTATTTTATCATCTCCATCTTTAACACATGCCTTGGGTT CCGGCTCCACCCTCGCCATCATCTCCGCCACCTCCACCGTCTGTGGCCTCGTGAGTTCCCAGCCAACCCAAAGCATCACCTGCTACAGACGAACCCCTAT GGAAGGAATCATCACTGTCCAACCTAACGTCTCCTTTTCCTCCATCTCCGGCGGTTCCACCTTCTTCTGCGGCCTACGTTCCGGGGGCTACGCTTTTTTA TGCTGGGACACAAGGAATTTGCCTTTTGATTCTCAAAGAGTCTATATTAACAACACTGCCTTTTTACAAAATCTTTCTGTTGGTGACGATCAAGTGTGTG CGGTTGTTAATGATACATTAAGTGTCAATAAAACAGGAACTGTTAGGTGTTGGAGAGGAGATGGTAATATAAGTAATCAATCACCAAGTGATGGTGATAA ATATAAGTCAATTTCAAGTGGGTTTGGCTTCTCTTGTGGGATTTTAATGGAAAGTAATAGAATCAAGTGTTGGGGTAATGATACAATTGCAAGAGAGATT GAGTTTGGTTTCAGAGACATGGAAATGTTGAGTCTTGAAGTGGGTGGTTTGCATGCTTGTGGTGTGAATTCTAGTGGGCTTTTGGTGTGCAGAGGGGATA AGAGTTTAGGTCAATTAAATGTTCCTTCAAATAATGTATTGGAATATTCACAGCTGGCTCTTGGGGATAGCCATAGTTGCGCGATTCGAAAGAATAATGG ATCAGTTGTTTGTTGGGGAGGTGATGGTGAATATAATGTGAATGAGATTCAAGGTGTTTTCTTTGAGTCTATTGTTTCCGGGTCTAATTTTACTTGTGGA TTGGTTTCGTTGAATTTTTCAGTTATGTGTTGGGGACCAGGGTGGCCTAATGGTTCAAGGACTCAGCTTCCATTGGGTGAGGTTTTACCAGGGCCATGTG TGCGATCTTCTTGTAGTGAATGTGGTTTGTATCCACTATCTGAGACATTGTGTTCTGGTTCAGGGAATATTTGCAAGCCTTGTGGGTTCAATGCTTCGAT GCCAACACCATTGGCTCCGCCGCCATTGCCATTAGCACCGCCCCCATCGATAGTGCCTAAGTCATCTCCGTCCAAGGAATTGACAACTGGGTTATTGGTG TTTGCTATTGTTGGATCAGTCGGGGGCTTTGCAGGGATTTGCACGATTATTTACTGTTTGTGGACTGGGGTTTGTTTTGGTAAGAAGAAAGTGCATAATT CAGTTCAGCCCACAATTACTAGAGATGGGTCCAATGGTGGCATGACTTCAAACAATAGCGGTCTAATTTCGAGATCATCAACGATAAGGCGCCAGAGCTC GAGGGCGATGAGACGACAGAGGAGTGGGACGTCATCAAAGCATGCTGATAGAGCTGAGGAGTTTAGTCTTGCTGAACTTGCTGCTGTCACCAACAATTTC TCACTAGAGAACAAGATTGGTGCAGGGAGCTTCGGTGTTGTTTATAAAGGTAAATTGAGAGATGGCCGTGAAGTGGCGATTAAGAGAGGGGAAACAGGGC AGAAGATGAAGAAGTTTCAAGAGAAAGAGAGTGCCTTTGATTCAGAATTGGCATTCTTGTCGAGGCTTCACCACAAACATCTAGTAAGGCTTGTCGGGTA TTGTGAGGATGGAGATGAGAGACTTCTAGTTTATGATTACATGAAGAATGGAGCTCTTTATGACCATTTACATGACAAGAACAACATTGAAAAGATTAGT AGTGTGATAAATTCATGGAAAATGAGGATCAAGATTGCACTTGATGCTGCTAGAGGAATTGAATATCTTCACAACTATGCAGTCCCATCAATAATTCACA GAGACATCAAGTCATCTAACATATTGCTGGATGCGAATTGGACAGCAAGAGTTTCTGATTTTGGATTATCATTGATGGGTCCTGGATCAGAAGAGAATTA CAATTGCAGACCAACAAAGGCAGCAGGGACAGTTGGGTACATTGATCCTGAGTACTATGGTCTAAATGTATTAACTGCGAAGAGTGACGTCTATGGCCTT GGTGTGGTATTGTTAGAACTCTTGACAGGAAAGAGAGCCATATTCAAGGGTGATGATAACGGAGGCACACCAACAAGTATAGTTGATTTTGCAGTGCCTA AGATTATGGTTAATGAATTGGGTAAGATCTTGGATCCCAGGGTAGGTCCGCCGGAGCTTAATGAAGCAGAAGCAGTGGAGCTGGTAGGATACACAGCAAT GCATTGTGTGAATTTGGAAGGGAAAGATAGGCCAACTATGACTGACATTGTTGCTAATTTGGAGCGAGCTCTGTCACTCTGTGATGGTAGCCATGGCAGC ATCTCAAGTGGTACAATATCAATTATTTCAGATTGA
AA sequence Show only first row Show all	>Potri.010G188600.1 pacid=42797907 polypeptide=Potri.010G188600.1.p locus=Potri.010G188600 ID=Potri.010G188600.1.v4.1 annot-version=v4.1 MTKLPFSSVTLFATTLTLLSFILSSPSLTHALGSGSTLAIISATSTVCGLVSSQPTQSITCYRRTPMEGIITVQPNVSFSSISGGSTFFCGLRSGGYAFL CWDTRNLPFDSQRVYINNTAFLQNLSVGDDQVCAVVNDTLSVNKTGTVRCWRGDGNISNQSPSDGDKYKSISSGFGFSCGILMESNRIKCWGNDTIAREI EFGFRDMEMLSLEVGGLHACGVNSSGLLVCRGDKSLGQLNVPSNNVLEYSQLALGDSHSCAIRKNNGSVVCWGGDGEYNVNEIQGVFFESIVSGSNFTCG LVSLNFSVMCWGPGWPNGSRTQLPLGEVLPGPCVRSSCSECGLYPLSETLCSGSGNICKPCGFNASMPTPLAPPPLPLAPPPSIVPKSSPSKELTTGLLV FAIVGSVGGFAGICTIIYCLWTGVCFGKKKVHNSVQPTITRDGSNGGMTSNNSGLISRSSTIRRQSSRAMRRQRSGTSSKHADRAEEFSLAELAAVTNNF SLENKIGAGSFGVVYKGKLRDGREVAIKRGETGQKMKKFQEKESAFDSELAFLSRLHHKHLVRLVGYCEDGDERLLVYDYMKNGALYDHLHDKNNIEKIS SVINSWKMRIKIALDAARGIEYLHNYAVPSIIHRDIKSSNILLDANWTARVSDFGLSLMGPGSEENYNCRPTKAAGTVGYIDPEYYGLNVLTAKSDVYGL GVVLLELLTGKRAIFKGDDNGGTPTSIVDFAVPKIMVNELGKILDPRVGPPELNEAEAVELVGYTAMHCVNLEGKDRPTMTDIVANLERALSLCDGSHGS ISSGTISIISD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Potri.010G188600 [exp]	0	1
AT5G05300			unknown protein		Potri.013G083500 [exp]	10.53	0.8126
AT5G42050			DCD (Development and Cell Deat...		Potri.003G141900 [exp]	12.00	0.7543
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Potri.016G128300 [exp]	21.90	0.7787	WRKY33.1
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Potri.012G121412 [exp]	24.97	0.7670
					Potri.012G007100 [exp]	30.72	0.7645
AT4G12731			unknown protein		Potri.001G226650 [exp]	38.47	0.7543
AT2G39420			alpha/beta-Hydrolases superfam...		Potri.010G212200 [exp]	41.85	0.7427
AT2G27660			Cysteine/Histidine-rich C1 dom...		Potri.012G038400 [exp]	43.26	0.7466
AT4G12731			unknown protein		Potri.001G226750 [exp]	45.13	0.7523
AT2G14095			unknown protein		Potri.002G101500 [exp]	47.41	0.7514

Compare expression of checked genes

Potri.010G188600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.