Plant FIBer expression Database

Potri.010G188700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G05660 1038 / 0 EBI, ATNFXL2 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1)
AT1G10170 213 / 6e-57 ATNFXL1 NF-X-like 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G043700
[exp]
225 / 3e-61 AT1G10170 1378 / 0.0 NF-X-like 1 (.1)
Potri.015G034500
[exp]
216 / 5e-58 AT1G10170 1363 / 0.0 NF-X-like 1 (.1)
Potri.008G068500
[exp]
189 / 4e-54 AT5G05660 171 / 2e-48 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028286
[exp]
1096 / 0 AT5G05660 1131 / 0.0 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1)
Lus10040200
[exp]
1040 / 0 AT5G05660 1064 / 0.0 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1)
Lus10025071
[exp]
230 / 1e-62 AT1G10170 1365 / 0.0 NF-X-like 1 (.1)
Lus10034470
[exp]
220 / 2e-59 AT1G10170 1345 / 0.0 NF-X-like 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01422 zf-NF-X1 NF-X1 type zinc finger
Representative CDS sequence
>Potri.010G188700.1 pacid=42799966 polypeptide=Potri.010G188700.1.p locus=Potri.010G188700 ID=Potri.010G188700.1.v4.1 annot-version=v4.1
ATGTCCTCCGCCCTTGGCTACCACCATCACCACCACCTACAACAAGAACAACAACAACAACAACAGAAACCCTTCTCCGACTCCGATTCCTACTCCGACT
CCGACTCCGACACCACCAACAGCCAAAACCAACACTCCGCAGATCTCACAAACTCAATCTTCAAATCCTACTTCGAACACGCCAACCACCAATCCTTACA
ACCAACGCAACACGACCTAACCAAAATCAAATCCTTCCTAACCTCCTCCTCCTCTGGCGCTCTATCATGTCTCATCTGTCTCGAACGCATCAAAACCTCC
GATCCGACCTGGTCTTGCACTTCTCTCTGCTACGCCGTTTTCCACCTTATCTGTATCCAATCCTGGGCTCGCCAAGCCTCCGATCTCTCCGCTCTTCGAG
CCTCCACGCGCCTCCCTATCTCCTCTGATAAAGCCGCTGAATCCTCCACCTGGAATTGCCCTAAATGCCGCTCTGATTATTCTAGATCTAAAATCCCCAG
AAATTACCTCTGTTTCTGTGGCAAAGTCGAAAATCCACCAAATGATCCTTGGATTTTATCCCATTCTTGCGGTGAAATCTGTAACCGTCAGTTGAAGAAT
AACTGCGGTCATTGCTGTTTGTTACTTTGCCATCCCGGTCCCTGCCCATCTTGCCCGAAACTTGTCAAAGCGACATGTTTTTGCGGCAAAACGACGGATG
TTAAGCGTTGCGGTTACAAATTATTTTCTTGTAACAATATTTGTAAAAAATCATTAGATTGCGGGATTCATAGCTGTAAACAAATTTGTCACGATGGACC
CTGCCCGCCGTGTAATGCCCGCGGGGTTTATAAATGTTCATGTGGAAGGAAAGTTGAGGAGAGGGAGTGTTGTGAGAGAGAATTTAGATGTGAGAATCCC
TGTGAGAAATTGTTAGCCTGCGGAAAACATGTGTGTGAGAGGGGGTGCCATTTTGGGGAGTGTGGAGATTGTCCTCTTCAAGGGAAGAGAGCATGTCCAT
GCGGGAAGAGACTCTATGAAGGAATGGCTTGTGATATTGTTGTGCCGCTTTGTGGTGGTACCTGTGATAAAATGTTGAGTTGTGGTTTCCATAGGTGCCA
CGAGAGATGTCATCGAGGGCCTTGCATTGAGACTTGTCGAATTGTTGTCACCAAGTTGTGTAGGTGTGGGGGGATGAAGAAAGAGGTTCCTTGCTATCAA
GATTTGGCATGTGAGAGGAAGTGTCAAAGAATGAGAGATTGTGGACGACATGCTTGTAAACGTCGCTGCTGTGATGGGGACTGTCCGCCATGTGGAGAGA
TTTGCGGCAAGAGGCTTCGGTGTAAGAATCACAAGTGTCCTGCCCCGTGTCATCGAGGTGCCTGTTCTCCTTGTCCTGTAATGTTTACAATTTCATGTGC
TTGTGGAGAGACTCATTTTGAGGTTCCCTGTGGCACTGAGAAAGACCAAAAGCCTCCAAAATGTCGTAAATCATGTGGAATATCTCCTTTATGCCGACAT
GGATCAGATTCTAAGCCACACAAATGCCATTATGGGGCATGCCCTCCTTGTCGATTGCTTTGTGATGAAGAATACCCATGCAGCCATAAGTGCAAATTAA
GGTGCCACGGCCCCAGACCACCTCCTAATCCAGATTTCACATTGAGGCCAAAGAAAAAGAAACCAAATCATCAGAGTGAAAGTACACCAGGAACCCCATG
CCCTCCTTGCCCTGAACTTGTTTGGAGGCCATGTCTTGGCCAGCACATTGGAGCAGAGAGAATGATGGTCTGCTCAAACAGAACCCAATTTTCCTGTGAA
AATCTGTGTGGGAGCCCTCTTTCTTGTGGCAATCATTATTGTACAAAAACTTGCCATGCACTGAAGAGCCAGTCTTCAACTTCATTGGTTCAACATAAAA
GAAGCGAGTCTTGTGAAGAGTGTCATCTTCCTTGTGAAAAGGAACGGAAACCTGCTTGTCGACATTCTTGCCCTCTACCATGTCATCCTGGGGACTGCCC
TCCTTGCAAAGTTCTTGTGAAACGATCTTGTTATTGTGGTTCTATGGTCCACGTTTTTGAGTGCATATATTACAATAACTTGTCAGAAAAGGAGCAAATG
GCTGCTCGTTCATGTGGTGGATCTTGCCATAGGAAATTGCCTAATTGTACACATTTATGTCCCAAGACATGTCATCCAGGTCAATGCCCATCACCTGACA
AGTGCGCCAAAAAGGTCACTGTTCGTTGTCAATGCCAAACCTTGAAAAAGGAGATGCCATGTCAAGAGGTTCAAGCAGCCTATCACAAAGCAGGTTCCGA
TCCCAAAGATATATCTAAAAGTCATTTTGGACTTGGACTTCTTCCTTGCAATTCTGGTTGCAAGAGTAAAGCACAGGTTGTGGATCAGGAATTGCATTTG
CGTAAATCCAAAGACCTGGAGGAGAAGGTTCCAGCCACTGAAATTCATCCACCGAAGCGCCGAAAACGGCGTGAACATTTACAAGAAACAAAGAAGACCT
CACAACTGCAGAAAATTGCTGCCACCATGAAGTGGCTTCTTGTAATAGTCACCCTTATGGTGACTATGGTGGCAGCTGCATATTTCGGTTACAAAGGTCT
CATTTGGCTCTCCGATTGGATGAATGAAGTTGAAGAGCAACAAAGACACAGAAGAAGACATCCACGAATCTAA
AA sequence
>Potri.010G188700.1 pacid=42799966 polypeptide=Potri.010G188700.1.p locus=Potri.010G188700 ID=Potri.010G188700.1.v4.1 annot-version=v4.1
MSSALGYHHHHHLQQEQQQQQQKPFSDSDSYSDSDSDTTNSQNQHSADLTNSIFKSYFEHANHQSLQPTQHDLTKIKSFLTSSSSGALSCLICLERIKTS
DPTWSCTSLCYAVFHLICIQSWARQASDLSALRASTRLPISSDKAAESSTWNCPKCRSDYSRSKIPRNYLCFCGKVENPPNDPWILSHSCGEICNRQLKN
NCGHCCLLLCHPGPCPSCPKLVKATCFCGKTTDVKRCGYKLFSCNNICKKSLDCGIHSCKQICHDGPCPPCNARGVYKCSCGRKVEERECCEREFRCENP
CEKLLACGKHVCERGCHFGECGDCPLQGKRACPCGKRLYEGMACDIVVPLCGGTCDKMLSCGFHRCHERCHRGPCIETCRIVVTKLCRCGGMKKEVPCYQ
DLACERKCQRMRDCGRHACKRRCCDGDCPPCGEICGKRLRCKNHKCPAPCHRGACSPCPVMFTISCACGETHFEVPCGTEKDQKPPKCRKSCGISPLCRH
GSDSKPHKCHYGACPPCRLLCDEEYPCSHKCKLRCHGPRPPPNPDFTLRPKKKKPNHQSESTPGTPCPPCPELVWRPCLGQHIGAERMMVCSNRTQFSCE
NLCGSPLSCGNHYCTKTCHALKSQSSTSLVQHKRSESCEECHLPCEKERKPACRHSCPLPCHPGDCPPCKVLVKRSCYCGSMVHVFECIYYNNLSEKEQM
AARSCGGSCHRKLPNCTHLCPKTCHPGQCPSPDKCAKKVTVRCQCQTLKKEMPCQEVQAAYHKAGSDPKDISKSHFGLGLLPCNSGCKSKAQVVDQELHL
RKSKDLEEKVPATEIHPPKRRKRREHLQETKKTSQLQKIAATMKWLLVIVTLMVTMVAAAYFGYKGLIWLSDWMNEVEEQQRHRRRHPRI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G05660 EBI, ATNFXL2 NFX1-like 2, EARLY BIRD, Arabi... Potri.010G188700
[exp]
0 1
AT4G27500 PPI1 proton pump interactor 1 (.1) Potri.001G399400
[exp]
1.41 0.7507 Pt-PPI1.4
AT5G55060 unknown protein Potri.011G089300
[exp]
2.00 0.7575
AT4G08180 ORP1C OSBP(oxysterol binding protein... Potri.019G015111
[exp]
4.12 0.6755
AT5G64070 PI-4KBETA1, PI4... phosphatidylinositol 4-OH kina... Potri.005G059000
[exp]
6.24 0.7295
AT5G07890 myosin heavy chain-related (.1... Potri.015G048900
[exp]
7.93 0.7034
AT4G35890 winged-helix DNA-binding trans... Potri.007G063600
[exp]
8.12 0.6921
AT2G30530 unknown protein Potri.013G160100
[exp]
13.26 0.6991
AT4G00800 SETH5 transducin family protein / WD... Potri.014G105601
[exp]
16.97 0.7055
AT3G60240 CUM2, EIF4G CUCUMOVIRUS MULTIPLICATION 2, ... Potri.014G052600
[exp]
17.32 0.6919
AT4G27500 PPI1 proton pump interactor 1 (.1) Potri.011G119700
[exp]
19.28 0.6094

Potri.010G188700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.