Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PLC1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08510 869 / 0 ATPLC2 phospholipase C 2 (.1.2.3) AT3G55940 819 / 0 Phosphoinositide-specific phospholipase C family protein (.1) AT2G40116 696 / 0 Phosphoinositide-specific phospholipase C family protein (.1) AT5G58700 679 / 0 ATPLC4 phosphatidylinositol-speciwc phospholipase C4 (.1.2) AT5G58690 645 / 0 ATPLC5 phosphatidylinositol-speciwc phospholipase C5 (.1) AT5G58670 629 / 0 ATPLC1 phospholipase C 1, ARABIDOPSIS THALIANA PHOSPHOLIPASE C, phospholipase C1 (.1) AT4G38530 597 / 0 ATPLC1 phospholipase C1 (.1) AT3G47290 384 / 4e-127 ATPLC8 phosphatidylinositol-speciwc phospholipase C8 (.1) AT3G47220 366 / 3e-120 ATPLC9 phosphatidylinositol-speciwc phospholipase C9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G068400 [exp] 1051 / 0 AT3G08510 888 / 0.0 phospholipase C 2 (.1.2.3) Potri.001G252100 [exp] 771 / 0 AT5G58700 791 / 0.0 phosphatidylinositol-speciwc phospholipase C4 (.1.2) Potri.001G252300 [exp] 740 / 0 AT3G08510 701 / 0.0 phospholipase C 2 (.1.2.3) Potri.010G188900 [exp] 732 / 0 AT2G40116 806 / 0.0 Phosphoinositide-specific phospholipase C family protein (.1) Potri.008G068300 [exp] 721 / 0 AT2G40116 823 / 0.0 Phosphoinositide-specific phospholipase C family protein (.1) Potri.009G046600 [exp] 620 / 0 AT3G08510 557 / 0.0 phospholipase C 2 (.1.2.3) Potri.001G252104 [exp] 91 / 4e-22 AT3G08510 82 / 1e-19 phospholipase C 2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014845 [exp] 948 / 0 AT3G08510 866 / 0.0 phospholipase C 2 (.1.2.3) Lus10009891 [exp] 940 / 0 AT3G08510 849 / 0.0 phospholipase C 2 (.1.2.3) Lus10028287 [exp] 918 / 0 AT3G08510 840 / 0.0 phospholipase C 2 (.1.2.3) Lus10040199 [exp] 864 / 0 AT3G08510 786 / 0.0 phospholipase C 2 (.1.2.3) Lus10040664 [exp] 731 / 0 AT5G58700 744 / 0.0 phosphatidylinositol-speciwc phospholipase C4 (.1.2) Lus10009894 [exp] 699 / 0 AT2G40116 824 / 0.0 Phosphoinositide-specific phospholipase C family protein (.1) Lus10036182 [exp] 682 / 0 AT3G08510 669 / 0.0 phospholipase C 2 (.1.2.3) Lus10038319 [exp] 672 / 0 AT3G08510 659 / 0.0 phospholipase C 2 (.1.2.3) Lus10018241 [exp] 527 / 0 AT5G58700 532 / 0.0 phosphatidylinositol-speciwc phospholipase C4 (.1.2) Lus10018240 [exp] 457 / 2e-156 AT5G58700 473 / 1e-162 phosphatidylinositol-speciwc phospholipase C4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0384 [poplar] [flax] PLC PF00387 [poplar] [flax] PI-PLC-Y Phosphatidylinositol-specific phospholipase C, Y domain CL0384 [poplar] [flax] PLC PF00388 [poplar] [flax] PI-PLC-X Phosphatidylinositol-specific phospholipase C, X domain
Representative CDS sequence Show only first row Show all	>Potri.010G188800.7 pacid=42797391 polypeptide=Potri.010G188800.7.p locus=Potri.010G188800 ID=Potri.010G188800.7.v4.1 annot-version=v4.1 ATGTCTAAACAGACCTACAGAGTTTGCTTGTGCTTTAGCAGGAGGTTCAAGCTTGCAGTGGCAGAGGCACCGGAGGAGATCAGGGCCTTGTTTAATCAAT ACTCGGATAATGGCATCATGACCGACAATCATCTCCACAGGTTCTTGATCGAGGTTCAAAAACAAGAAAAGGCTACTCTTGAGGAAGCACAAGCCATCAT TGAAAGCCTCAAACATTTGGCCATTTTTCACCGTAAAGGGCTCAATCTTGAGGCCTTTTTTAAGTATCTTTTTGGTGATAATAACCCTCCTCTTGATCTT AAACTTGGGGCGCACCATGATATGACAGCTCCCATTTCACACTATTTCATTTATACCGGCCACAATTCATATCTAACTGGGAATCAGCTCAGTAGCGATT GCAGCGATGTTCCCATCATAAATGCACTGAAGAAAGGTGTGAGAGTAATTGAATTGGATATATGGCCAAATTCCGACAAGGATGATGTGGAGGTACTTCA TGGGAGGACTTTGACAACCCCGGTGCAACTTATCAAATGTTTGAGGTCAATCAAGGAGCATGCTTTTACTGCCTCTGAATTCCCTGTTGTTATAACTCTA GAAGATCACCTTACTCCAGATCTCCAGTCTAAAGTGTCTAAGATGGTCACTCAAACATTTGGAGACACACTGTTTTCTCCTGGCTCAGAATGCTTGAAGG AATTCCCTTCCCCTGAGTCATTGAAGAGACGTATTATCATATCAACAAAACCACCGAAGGAGTACCTTGAGGCAAAGGAAATTAAGGATAAAGAGAGTGA TTCCCAGAAGGGTAATGCTGCTCCCGATGAAGAAGCTTGGGGGAAAGAAATCCTTAATCTTAAAGGCGCTGATGACAAGCAGAATGAATTGGACGAAGAT GATAATGATGCCGAGGAAGATCCTGGTGAAGGAGACCACAAGTTGCCGCATGATATAGCACCAGAATATAAACGTTTAATTGCTATTCCTGCTGGGAAGC CTAAAGGTGGATTAGAAGAATGTTTGAAAGTGGATCCTGATAAAGCGAGGCGTCTTAGCTTAAGCGAGCAACAACTTGAAAATGCTGCAGAGACCCATGG AAAAGAAATTGTCAGGTTTACCCAGCGGAATATACTCAGGGTGTATCCAAAGGGTATTCGTGTGAACTCATCCAACTACAACCCACTAATTGGATGGATG CATGGTGCTCAAATGGTTGCTTTTAATATGCAGGGATATGGAAGATCACTCTGGATGATGCAAGGAATGTTCAGAGCCAATGGTGGGTGTGGTTTTGTGA AGAAACCGGATTTTCTTCTGAAGTCTGGTCCACATGGCGAGGTATTTGATCCCAAAGCCAAGTTACCTGTGCAAAAAACTTTGAAGGTGAAAATATACAT GGGTGAAGGATGGTATTATGATTTCCATCACACACATTTTGATGCATATTCCCCACCAGATTTCTATGTGAGGGTTGGGATTGCTGGGGTCCCTGCAGAT ACTGGGATGAAGAAAACAAGGACTCTGGAGGACAATTGGATACCTGTTTGGGATGAGGGGTTTGAGTTTCCATTAACTGTTCCAGATCTAGCTCTGCTCC GGATTGAAGTTCATGAGTATGACATGTCAGAAAAGGATGACTTTGGTGGTCAAACATGCCTTCCTGTGCGGGAGTTGAGAGAAGGGATTCGAGCAGTTCC ACTCCATGACCGCAAGGGAGAGAAATACAATTCTGTAAAGCTCCTTGTGCGTCTCGAATTTGTTTGA
AA sequence Show only first row Show all	>Potri.010G188800.7 pacid=42797391 polypeptide=Potri.010G188800.7.p locus=Potri.010G188800 ID=Potri.010G188800.7.v4.1 annot-version=v4.1 MSKQTYRVCLCFSRRFKLAVAEAPEEIRALFNQYSDNGIMTDNHLHRFLIEVQKQEKATLEEAQAIIESLKHLAIFHRKGLNLEAFFKYLFGDNNPPLDL KLGAHHDMTAPISHYFIYTGHNSYLTGNQLSSDCSDVPIINALKKGVRVIELDIWPNSDKDDVEVLHGRTLTTPVQLIKCLRSIKEHAFTASEFPVVITL EDHLTPDLQSKVSKMVTQTFGDTLFSPGSECLKEFPSPESLKRRIIISTKPPKEYLEAKEIKDKESDSQKGNAAPDEEAWGKEILNLKGADDKQNELDED DNDAEEDPGEGDHKLPHDIAPEYKRLIAIPAGKPKGGLEECLKVDPDKARRLSLSEQQLENAAETHGKEIVRFTQRNILRVYPKGIRVNSSNYNPLIGWM HGAQMVAFNMQGYGRSLWMMQGMFRANGGCGFVKKPDFLLKSGPHGEVFDPKAKLPVQKTLKVKIYMGEGWYYDFHHTHFDAYSPPDFYVRVGIAGVPAD TGMKKTRTLEDNWIPVWDEGFEFPLTVPDLALLRIEVHEYDMSEKDDFGGQTCLPVRELREGIRAVPLHDRKGEKYNSVKLLVRLEFV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Potri.010G188800 [exp]	0	1	Pt-PLC1.1
AT4G27190			NB-ARC domain-containing disea...		Potri.001G422800 [exp]	10.48	0.6520	Pt-RGA-II24.59
AT5G57970			DNA glycosylase superfamily pr...		Potri.006G184700 [exp]	22.13	0.5414
AT5G28910			unknown protein		Potri.013G047600 [exp]	28.72	0.5225
AT5G38470		RAD23D	RADIATION SENSITIVE23D, Rad23 ...		Potri.008G119700 [exp]	34.71	0.5948
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Potri.006G039700 [exp]	45.56	0.5464
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Potri.018G119200 [exp]	54.08	0.5308
AT2G05160	C3HZnF		CCCH-type zinc fingerfamily pr...		Potri.002G221100 [exp]	72.24	0.5355
AT5G35330		MBD2, MBD02, AT...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.018G146700 [exp]	86.94	0.5293
AT2G34830	WRKY	ATWRKY35, WRKY3...	maternal effect embryo arrest ...		Potri.002G195300 [exp]	118.05	0.4874

Compare expression of checked genes

Potri.010G188800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.