Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40116 806 / 0 Phosphoinositide-specific phospholipase C family protein (.1) AT5G58700 683 / 0 ATPLC4 phosphatidylinositol-speciwc phospholipase C4 (.1.2) AT3G08510 655 / 0 ATPLC2 phospholipase C 2 (.1.2.3) AT5G58690 627 / 0 ATPLC5 phosphatidylinositol-speciwc phospholipase C5 (.1) AT3G55940 610 / 0 Phosphoinositide-specific phospholipase C family protein (.1) AT5G58670 531 / 0 ATPLC1 phospholipase C 1, ARABIDOPSIS THALIANA PHOSPHOLIPASE C, phospholipase C1 (.1) AT4G38530 513 / 5e-177 ATPLC1 phospholipase C1 (.1) AT3G47290 384 / 4e-127 ATPLC8 phosphatidylinositol-speciwc phospholipase C8 (.1) AT3G47220 350 / 9e-114 ATPLC9 phosphatidylinositol-speciwc phospholipase C9 (.1) AT5G04220 44 / 0.0003 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G068300 [exp] 1101 / 0 AT2G40116 823 / 0.0 Phosphoinositide-specific phospholipase C family protein (.1) Potri.001G252100 [exp] 750 / 0 AT5G58700 791 / 0.0 phosphatidylinositol-speciwc phospholipase C4 (.1.2) Potri.008G068400 [exp] 692 / 0 AT3G08510 888 / 0.0 phospholipase C 2 (.1.2.3) Potri.010G188800 [exp] 688 / 0 AT3G08510 869 / 0.0 phospholipase C 2 (.1.2.3) Potri.001G252300 [exp] 636 / 0 AT3G08510 701 / 0.0 phospholipase C 2 (.1.2.3) Potri.009G046600 [exp] 535 / 0 AT3G08510 557 / 0.0 phospholipase C 2 (.1.2.3) Potri.001G252104 [exp] 66 / 3e-13 AT3G08510 82 / 1e-19 phospholipase C 2 (.1.2.3) Potri.019G080000 [exp] 44 / 0.0003 AT1G22610 1442 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.005G241700 [exp] 42 / 0.001 AT1G20080 816 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009894 [exp] 879 / 0 AT2G40116 824 / 0.0 Phosphoinositide-specific phospholipase C family protein (.1) Lus10014845 [exp] 710 / 0 AT3G08510 866 / 0.0 phospholipase C 2 (.1.2.3) Lus10009891 [exp] 699 / 0 AT3G08510 849 / 0.0 phospholipase C 2 (.1.2.3) Lus10040664 [exp] 696 / 0 AT5G58700 744 / 0.0 phosphatidylinositol-speciwc phospholipase C4 (.1.2) Lus10028287 [exp] 692 / 0 AT3G08510 840 / 0.0 phospholipase C 2 (.1.2.3) Lus10040199 [exp] 668 / 0 AT3G08510 786 / 0.0 phospholipase C 2 (.1.2.3) Lus10036182 [exp] 588 / 0 AT3G08510 669 / 0.0 phospholipase C 2 (.1.2.3) Lus10038319 [exp] 585 / 0 AT3G08510 659 / 0.0 phospholipase C 2 (.1.2.3) Lus10018241 [exp] 493 / 3e-170 AT5G58700 532 / 0.0 phosphatidylinositol-speciwc phospholipase C4 (.1.2) Lus10018240 [exp] 441 / 3e-149 AT5G58700 473 / 1e-162 phosphatidylinositol-speciwc phospholipase C4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0384 [poplar] [flax] PLC PF00387 [poplar] [flax] PI-PLC-Y Phosphatidylinositol-specific phospholipase C, Y domain CL0384 [poplar] [flax] PLC PF00388 [poplar] [flax] PI-PLC-X Phosphatidylinositol-specific phospholipase C, X domain
Representative CDS sequence Show only first row Show all	>Potri.010G188900.1 pacid=42799786 polypeptide=Potri.010G188900.1.p locus=Potri.010G188900 ID=Potri.010G188900.1.v4.1 annot-version=v4.1 ATGGGGAGCTACAAGAAAGACCAGCGTAGATCATTTTCGTCACCAGAACCTAGCAACAGCAACAAAGATGAAATGGGGAGCTATAATTACAAGATGTTTA ATCTTTTTAACAGAAAGTTCAAGATCACGGAGGCTGAGCCACCCAAAGACGTGAAACAAGTTTTTTCCAAGTTCTCGGATGGTGGGTCCCACATGATGGC CGATCAGCTCCGGCGATTCCTGGTTTTGCACCAGGACGAGCTTCACTGCACGCTGGCGGAGGCAAAGAAGATCATGGAGGAAGTTATCAATAGGAGGCAT CATTTGACGAGATACAGTAGACATTCACTTAATCTTGATGATTTTTTCCATTTCCTGCTTTATGATGATCTCAATGGGCCCATCACCTCTCAGGTACACC ATGATATGACTGCTCCATTGTCACACTATTTCATATATACAGGGCATAATTCCTACCTAACTGGGAATCAACTGAGCAGTGATTGCAGCGAGGTCCCAAT CGTAAAAGCTTTGCAAAGAGGTGTAAGAGTAATTGAACTAGATTTGTGGCCTGGTTCCTCAAAAGATGAGATTCTTGTTCTTCATGGAAGGACCCTGACC ACTCCAGTGCCACTCATTAAATGTCTGAAGTCCATAAGAGACTATGCTTTCTCTAGTTCTCCATATCCAGTCATTATAACTTTAGAAGATCACCTTAGGC CAGACCTTCAGTCTAAAGTTGCAGAGATGGTTACTCAGACATTTGGCGGAATGCTGTACTATCCTGAGTCAGATTCCTTGGTACAGTTCCCTTCTCCAGA ATCATTGAAACATCGCATAATCATTTCAACCAAACCACCAAAAGAGTATCTTGAATCTAATGGCATCAAGCAAAAGGGAGCATTATCACCAGGTGGAAGG AATTCATCCGAAGAAGATGAAGAAGCATCAGGGATACCAGACCATACAGCTGAACTAGAAGCTGATGATAGGAGCAACAGTGATCAAGATGATGCAGACC TAACTGATTGTGACAATAAATCAGGCCAGCTAGGGGCACCTGCATATAAACGTCTAATCACAATACATGCTGGGAAGCCAAAGGGTCAATTAAAGGATGC ATTGAAAGTTGCAGTTGATAAAGTTAGACGTCTTAGTTTGAGTGAACAGGAACTTGAAAAGGCTGCCACCACAAATGGAACTGATGTAGTGAGATTTACA CAGAATAATATTCTGAGAATATACCCTAAGGGAACTCGGATCACCTCCTCTAATTACAAACCTCTTGTTGGATGGATGCATGGAGCTCAGATGATTGCGT TTAATATGCAGGGATACGGAAAATCACTTTGGTTGATGCACGGGATGTTTAGGGCCAATGGAGGGTGTGGTTACCTTAAGAAACCAGATTTTCTAATGGA GAAAGGTCCAAATAACGAGGTGTTTGATCCTAAAATAAAGTTAGCAGTAACAAAGACATTAAAGGTGAAAGTATACTTGGGCGATGGATGGCGCCTTGAT TTTAGCCACACGCACTTTGATTCATACTCACCACCAGACTTCTACACAAAGGTTTACATTGTTGGGGCACCAGCTGATGCTGCAAAGAAAAAAACAAAGA TAATCGAGGACAACTGGTCTCCAGCTTGGAATCAAGAATTCACCTTCCCCCTAACTGTTCCCGAATTGGCTTTGCTTCGGATTGAAGTGCGAGAGTATGA CATGTCAGAGAAGGATGACTTCGGTGGTCAAACGTGCTTGCCTGTCTCGGATCTGAGACCAGGAATCCGATCAGTCCCTCTCCACGATAAGAAAGGAGAG AAACTCAAGAATGTAAGGCTTCTAGTGGGGTTTCAGTTTGTATAA
AA sequence Show only first row Show all	>Potri.010G188900.1 pacid=42799786 polypeptide=Potri.010G188900.1.p locus=Potri.010G188900 ID=Potri.010G188900.1.v4.1 annot-version=v4.1 MGSYKKDQRRSFSSPEPSNSNKDEMGSYNYKMFNLFNRKFKITEAEPPKDVKQVFSKFSDGGSHMMADQLRRFLVLHQDELHCTLAEAKKIMEEVINRRH HLTRYSRHSLNLDDFFHFLLYDDLNGPITSQVHHDMTAPLSHYFIYTGHNSYLTGNQLSSDCSEVPIVKALQRGVRVIELDLWPGSSKDEILVLHGRTLT TPVPLIKCLKSIRDYAFSSSPYPVIITLEDHLRPDLQSKVAEMVTQTFGGMLYYPESDSLVQFPSPESLKHRIIISTKPPKEYLESNGIKQKGALSPGGR NSSEEDEEASGIPDHTAELEADDRSNSDQDDADLTDCDNKSGQLGAPAYKRLITIHAGKPKGQLKDALKVAVDKVRRLSLSEQELEKAATTNGTDVVRFT QNNILRIYPKGTRITSSNYKPLVGWMHGAQMIAFNMQGYGKSLWLMHGMFRANGGCGYLKKPDFLMEKGPNNEVFDPKIKLAVTKTLKVKVYLGDGWRLD FSHTHFDSYSPPDFYTKVYIVGAPADAAKKKTKIIEDNWSPAWNQEFTFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSDLRPGIRSVPLHDKKGE KLKNVRLLVGFQFV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40116			Phosphoinositide-specific phos...		Potri.010G188900 [exp]	0	1
AT5G53540			P-loop containing nucleoside t...		Potri.012G027901 [exp]	6.63	0.8784
					Potri.012G066225 [exp]	17.74	0.8435
AT3G22425		HISN5A, IGPD	imidazoleglycerol-phosphate de...		Potri.008G152701 [exp]	29.73	0.8377
AT1G63450		RHS8	root hair specific 8 (.1)		Potri.001G105300 [exp]	29.94	0.8263
AT4G31830			unknown protein		Potri.018G106300 [exp]	31.65	0.8425
AT1G64790		ILA	ILITYHIA (.1.2)		Potri.019G024200 [exp]	33.98	0.8396
AT3G23750			Leucine-rich repeat protein ki...		Potri.005G049200 [exp]	34.29	0.8423
AT5G09380			RNA polymerase III RPC4 (.1)		Potri.005G126700 [exp]	42.40	0.8226
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Potri.016G120200 [exp]	42.70	0.8346
AT3G09780		CCR1, ATCRR1	CRINKLY4 related 1 (.1)		Potri.016G089200 [exp]	45.47	0.8100

Compare expression of checked genes

Potri.010G188900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.