Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55920 303 / 3e-105 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G29960 286 / 8e-99 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT5G58710 280 / 2e-96 ROC7 rotamase CYP 7 (.1) AT2G21130 216 / 2e-71 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G38740 215 / 3e-71 ROC1 rotamase CYP 1 (.1) AT4G34870 209 / 6e-69 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1) AT2G16600 209 / 7e-69 ROC3 rotamase CYP 3 (.1.2) AT4G34960 210 / 1e-68 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G56070 206 / 1e-67 ROC2 rotamase cyclophilin 2 (.1.2) AT3G62030 201 / 2e-64 CYP20-3, ROC4 cyclophilin 20-3, rotamase CYP 4 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G046500 [exp] 303 / 1e-105 AT2G29960 323 / 4e-114 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Potri.001G251700 [exp] 288 / 2e-99 AT5G58710 313 / 6e-110 rotamase CYP 7 (.1) Potri.002G021500 [exp] 223 / 1e-74 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2) Potri.004G168800 [exp] 220 / 4e-73 AT2G16600 278 / 4e-97 rotamase CYP 3 (.1.2) Potri.009G130100 [exp] 219 / 7e-73 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.004G173500 [exp] 220 / 1e-72 AT4G34960 317 / 7e-111 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G132800 [exp] 218 / 2e-71 AT4G34960 328 / 2e-115 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G240200 [exp] 215 / 3e-71 AT2G16600 276 / 2e-96 rotamase CYP 3 (.1.2) Potri.019G014396 [exp] 213 / 1e-70 AT3G56070 277 / 1e-96 rotamase cyclophilin 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030408 [exp] 325 / 9e-113 AT3G55920 333 / 5e-116 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10014846 [exp] 313 / 2e-108 AT2G29960 310 / 6e-107 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10040666 [exp] 305 / 3e-106 AT5G58710 347 / 2e-123 rotamase CYP 7 (.1) Lus10018238 [exp] 305 / 5e-106 AT2G29960 348 / 4e-124 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10038315 [exp] 275 / 5e-94 AT2G29960 313 / 1e-109 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10036180 [exp] 259 / 1e-87 AT2G29960 300 / 3e-104 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10007579 [exp] 215 / 2e-71 AT2G16600 311 / 2e-110 rotamase CYP 3 (.1.2) Lus10022012 [exp] 215 / 3e-71 AT3G56070 295 / 1e-103 rotamase cyclophilin 2 (.1.2) Lus10042553 [exp] 215 / 5e-71 AT3G56070 297 / 1e-104 rotamase cyclophilin 2 (.1.2) Lus10012167 [exp] 211 / 1e-69 AT2G16600 313 / 4e-111 rotamase CYP 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [poplar] [flax] Cyclophil-like PF00160 [poplar] [flax] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Potri.010G189000.1 pacid=42799148 polypeptide=Potri.010G189000.1.p locus=Potri.010G189000 ID=Potri.010G189000.1.v4.1 annot-version=v4.1 ATGTCCACCACAACAAGACTGGTGTCCATCGCTCTTTTATGGATTCTTGTTCTCTTTGGAACTCTAGCTTTTATCCAGAATCGATTAAGCGATGCTGCGG TCTCATCAGATCCTAAACTTGTTAATAACGAACTCGGTCAGGAAAACAAGTCAGAGGGGGATTTGGATTTGGAAGGAGTTACTCACAGAGTTTACTTCGA TGTTGAGATTGCTGGAAAACCCATGGGTCGTGTTGTTATGGGCCTCTTTGGAAAAACAGTTCCTAAGACCGCAGAAAACTTTCGAGCACTTTGCACGGGA GAGAAAGGAATGGGAAAGAGTGGGAAGCCTCTCCATTTCAAAGGGAGTACGTTCCATAGGATTATTCCCAGCTTTATGATCCAGGGTGGTGATTTTACTC AAGGTGATGGACGAGGTGGAGAGTCGATCTATGGTGAGAAGTTTGCCGATGAGAACTTCAAGCTGAAGCACACTGGACCTGGAATGCTGTCAATGGCAAA TGCAGGACCAGACACCAATGGATCACAATTTTTCATCACCACTGTAGTGACTAGCTGGTTGGATGGCCACCATGTTGTGTTTGGCAAGGTGCTTTCTGGC ATGGATATTATATACAAGATTGAAGCTGAAGGCAAACAGAATGGAGTGCCCAGACATAAAGTTGTGGTTTTAGACTCTGGTGAAATGCCTTTGTGA
AA sequence Show only first row Show all	>Potri.010G189000.1 pacid=42799148 polypeptide=Potri.010G189000.1.p locus=Potri.010G189000 ID=Potri.010G189000.1.v4.1 annot-version=v4.1 MSTTTRLVSIALLWILVLFGTLAFIQNRLSDAAVSSDPKLVNNELGQENKSEGDLDLEGVTHRVYFDVEIAGKPMGRVVMGLFGKTVPKTAENFRALCTG EKGMGKSGKPLHFKGSTFHRIIPSFMIQGGDFTQGDGRGGESIYGEKFADENFKLKHTGPGMLSMANAGPDTNGSQFFITTVVTSWLDGHHVVFGKVLSG MDIIYKIEAEGKQNGVPRHKVVVLDSGEMPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55920			Cyclophilin-like peptidyl-prol...		Potri.010G189000 [exp]	0	1
AT1G36380			unknown protein		Potri.002G090100 [exp]	1.73	0.8521
AT5G62960			unknown protein		Potri.012G082400 [exp]	5.09	0.8005
					Potri.019G120400 [exp]	5.47	0.8121
AT1G33230			TMPIT-like protein (.1)		Potri.001G454400 [exp]	9.27	0.7436
					Potri.008G024601 [exp]	11.40	0.8381
AT4G16180			unknown protein		Potri.008G104100 [exp]	12.12	0.8155
AT3G45740			hydrolase family protein / HAD...		Potri.008G045700 [exp]	12.44	0.7853
AT1G64200		VHA-E3	vacuolar H+-ATPase subunit E i...		Potri.016G139800 [exp]	13.26	0.8019
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Potri.004G033600 [exp]	13.41	0.7863	STP1.1
					Potri.015G116300 [exp]	13.74	0.7942

Compare expression of checked genes

Potri.010G189000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.