Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13620 595 / 0 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G05580 557 / 0 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT2G31910 498 / 3e-164 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1) AT5G41610 395 / 6e-125 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT3G17630 368 / 7e-115 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT4G23700 368 / 1e-114 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT3G53720 329 / 1e-99 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT1G64170 323 / 8e-98 ATCHX16 cation/H+ exchanger 16, cation/H+ exchanger 16, cation/H+ exchanger 16 (.1) AT1G06970 289 / 3e-85 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT2G28180 286 / 4e-84 CHX08, ATCHX8 CATION/H+ EXCHANGER 8, Cation/hydrogen exchanger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G102700 [exp] 694 / 0 AT2G13620 525 / 3e-175 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G105200 [exp] 585 / 0 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G111400 [exp] 564 / 0 AT1G05580 645 / 0.0 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) Potri.004G131300 [exp] 525 / 3e-174 AT2G13620 640 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.013G142301 [exp] 418 / 1e-133 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.001G096320 [exp] 417 / 3e-133 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.003G134900 [exp] 401 / 3e-127 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.010G005200 [exp] 370 / 1e-115 AT3G17630 1101 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.010G004800 [exp] 371 / 2e-115 AT3G17630 1091 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030013 [exp] 595 / 0 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 592 / 0 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10039138 [exp] 570 / 0 AT2G13620 573 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10004932 [exp] 449 / 5e-145 AT2G13620 568 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10040881 [exp] 447 / 4e-144 AT2G13620 572 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10015268 [exp] 442 / 1e-141 AT2G13620 507 / 1e-166 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10017540 [exp] 421 / 3e-134 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10032332 [exp] 360 / 1e-111 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10025322 [exp] 328 / 2e-99 AT3G53720 793 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Lus10026408 [exp] 324 / 7e-98 AT2G13620 441 / 2e-142 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF00999 [poplar] [flax] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Potri.010G189100.1 pacid=42797813 polypeptide=Potri.010G189100.1.p locus=Potri.010G189100 ID=Potri.010G189100.1.v4.1 annot-version=v4.1 ATGCAAGGCAGTGACAAAGCAGAACTAAAATATACAGCTACGGAAATATATTTTAATGGTTATACAATAACCGCAAACCTGTCTTCAGGTGCACTTAATG TATGTAGTTATGAGGCCGTGAGCAATTCAACTACCCTTCGGAAATTTTCGAACCCCTTTCTAGATGCTACCCCATTCGTCACAAACCTATGCTCAGCGAT ACTGCTGATTCAATTGCTCTTCCTTCTCTTCCATCGTTTGCCTCGTTTCTTCTCCGAGTTGATTACTGGTCTACTAATGGGTCCTATGGTGCTCGGAGCA AACGCGCTTTTTTCAGAATACACTCATCCTGTGAGACAAACTGGAGCGACAGAGACTTTAACAAATTTGGGAGTCATTTACTACATGTTTCTCGTGGGTT TACAGATGGACCTAACCACAATAAGAAGAATCAGTAAAGGTGCATGGGGCAATGCTTTGTTTGGAATTCTATTACCCTTAGGCATGGGAGCAGGTTTATT TCACCTACTACCTGGAAAAACCCACTTTGAGAATCCTCTTGGTGCCTGGTTTTGGTCTGTTGCCCTCACAGTCACAAGCTTCCCGGATCTTGCTCAGATC CTTTCAGACCTGAAGCTTCTACGAACAGAAGTTGGACAAATGGCCATATCCTCAGCTTTTGTTAGTGACATCGCATCTTGGAGTTTTCTTGTTGTGACAA TAACAGTTAGTAATGGGAAAACCCGTGCCTTCATCCTCCCGACCGTTGCCTTCATATTATTTTGTTGGTTTGTGTTACGTCCGGTTCTTTCGCAGATTAT TGACAAAGATTCCTCAAAAGGAGGCAACTACAGTGACCTTTGTATATACTCTATTCTTACTGGGGTGGTCGTTTGTGGATTCATCACAGACGCTTGTGGT TCTCACTCTATGATCGGAGCTTTTATGTTTGGACTTATTATACCTGATGGAGAGCTTGGAATGATGATTATGGAGAAACTTGAAGACTTTGTGCCAGGAA TCATGCTTCCTGCCTTTTTTGTGCTTACTGGGACTAGATGCAATATTCTTGCTATGTTTTACAACATTAATCCTTTCGCGGTTCTGGGAATTCTAGTCTT AGCTTGCTTAGCCAAGATTATAAGCGGTTTCTTGGTTGCCATGTACTATGGCATGCCAGTTCGTGAAGGTGTCGCCCTTGGAGTTCTTATGAACGCCAAA GGGGTTTTGGCTTTGATTATTCTTAATGTTGGTAGAGACATAAAGGCTGTGGATAACCAACCGTTTACTATAATGGTGATGACAATTTTACTCATGACGA TTCTTGTAAAACCGATCCCCCTTTGGGCTTGTAAGACTACCAAGCATTTCAGGAAATACAAACTCCGGACCTTGCAAGAAAGCAAACCTAACTCAGAACT ACGAATACTTGCATGCATTCATACTACTCGCAACCTATCAGGAATACTCAACCTCCTTGAACTGTCTAATTCAACCGAGAAATCACCAATTTGTGTATTT GCTGCGTGTCTAGTAGGTCTGAGTGGACGGACTAATGCCATGCTAATCGTTCACGATGAGAATCGTAATTCCAGTGGCCAAAACTACCCCCCCGCCCGTG GGAGATCAGATGCCGACCAAATCATCAGCACCTTGGAGAACTACGAAAGAAGAAACCAGTCAATGTCCTTTCTGCCACTGACAGTTGTATCTCCTTACAC CTCCATGCACGAGGATATCCATAACCTTGCTGAGGACAAACGCGTGACTTTCATCCTAATTCCATTTCACAAACAATCTGGTGCAGAAGGGATGCAACAA GAGAACTCTTCTATCAGACTAGTAACCCAAAATCTACTAACAAAAGCTCCATGCTCTGTGGGGATATTTATTGATCGAGGCCTCAGTTTGAAGATTTATA ACGAGGGTAGCCATCGCAGAGAAAAGCTAAATTTTGCCATGTTTTATACTGGGGGACATGACGATCGTGAGGCCTTAACTTATGCTTGCAGGATGGCAGG GTCTCTGAATGTGAGTTTAAAAGTTGTACGATTTCTTCCAGGTAAAGAAGCAATAGAAATGATGGATATGGAAGAGGAAGTGGAGGGTGAAAATCAAAGA TTTGTTGATGATATGTACCTGAATGAGTTACGATTTATGACAATGTGCAATCCATCTGCAACTTGGGTGGATAAGTCGGTAAATAGCGGGGATGAAATTA TCATCGCAGCAAAAGATCTAGCTGATGAATATGATCTATATATTGTGGGGAGGGGTCAGGGAATGATAAAGCCATTTGCTTTGGGGCTATCGGAGTGGAG TAACTGTGAAGAGCTTGGGCCACTAGGAGATGCATTATCAACATCTGACTTCGCACAACACGCATCGATTCTTGTAGTCCAACAACATTCTGTTTCAACC ATGAAAAACAAGGGCATGCCGCAGCATCAAGAGAAAGCTGGACTTGAAACTTGGAAATCTCCTTTGAGTAGTCGTGACCTTCTGAACATTGTAAATCACA GAAAGAAGACAGATGAAGAGGATGATTAA
AA sequence Show only first row Show all	>Potri.010G189100.1 pacid=42797813 polypeptide=Potri.010G189100.1.p locus=Potri.010G189100 ID=Potri.010G189100.1.v4.1 annot-version=v4.1 MQGSDKAELKYTATEIYFNGYTITANLSSGALNVCSYEAVSNSTTLRKFSNPFLDATPFVTNLCSAILLIQLLFLLFHRLPRFFSELITGLLMGPMVLGA NALFSEYTHPVRQTGATETLTNLGVIYYMFLVGLQMDLTTIRRISKGAWGNALFGILLPLGMGAGLFHLLPGKTHFENPLGAWFWSVALTVTSFPDLAQI LSDLKLLRTEVGQMAISSAFVSDIASWSFLVVTITVSNGKTRAFILPTVAFILFCWFVLRPVLSQIIDKDSSKGGNYSDLCIYSILTGVVVCGFITDACG SHSMIGAFMFGLIIPDGELGMMIMEKLEDFVPGIMLPAFFVLTGTRCNILAMFYNINPFAVLGILVLACLAKIISGFLVAMYYGMPVREGVALGVLMNAK GVLALIILNVGRDIKAVDNQPFTIMVMTILLMTILVKPIPLWACKTTKHFRKYKLRTLQESKPNSELRILACIHTTRNLSGILNLLELSNSTEKSPICVF AACLVGLSGRTNAMLIVHDENRNSSGQNYPPARGRSDADQIISTLENYERRNQSMSFLPLTVVSPYTSMHEDIHNLAEDKRVTFILIPFHKQSGAEGMQQ ENSSIRLVTQNLLTKAPCSVGIFIDRGLSLKIYNEGSHRREKLNFAMFYTGGHDDREALTYACRMAGSLNVSLKVVRFLPGKEAIEMMDMEEEVEGENQR FVDDMYLNELRFMTMCNPSATWVDKSVNSGDEIIIAAKDLADEYDLYIVGRGQGMIKPFALGLSEWSNCEELGPLGDALSTSDFAQHASILVVQQHSVST MKNKGMPQHQEKAGLETWKSPLSSRDLLNIVNHRKKTDEEDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Potri.010G189100 [exp]	0	1
AT3G11830			TCP-1/cpn60 chaperonin family ...		Potri.004G195100 [exp]	7.68	0.7573
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Potri.014G189600 [exp]	14.07	0.7363	BRCA2.1
AT3G18630		ATUNG	uracil dna glycosylase (.1)		Potri.010G169600 [exp]	21.72	0.6697
AT4G02425			unknown protein		Potri.002G204700 [exp]	22.49	0.6933
AT1G14710			hydroxyproline-rich glycoprote...		Potri.008G138900 [exp]	32.12	0.6917
AT3G22430			unknown protein		Potri.009G147201 [exp]	52.91	0.6361
AT2G20760			Clathrin light chain protein (...		Potri.019G102000 [exp]	62.20	0.7046
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Potri.013G011900 [exp]	71.13	0.6704
AT1G07970			unknown protein		Potri.009G014900 [exp]	90.92	0.6708
AT5G23910			ATP binding microtubule motor ...		Potri.015G146000 [exp]	110.67	0.6241

Compare expression of checked genes

Potri.010G189100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.