Plant FIBer expression Database

Potri.010G189500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G11220 453 / 3e-160 ELO1 ELONGATA 1, Paxneb protein-related (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032284
[exp]
530 / 0 AT3G11220 436 / 9e-152 ELONGATA 1, Paxneb protein-related (.1.2)
Lus10024652
[exp]
410 / 1e-143 AT3G11220 353 / 2e-121 ELONGATA 1, Paxneb protein-related (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF05625 PAXNEB PAXNEB protein
Representative CDS sequence
>Potri.010G189500.4 pacid=42798848 polypeptide=Potri.010G189500.4.p locus=Potri.010G189500 ID=Potri.010G189500.4.v4.1 annot-version=v4.1
ATGGCGGCGACTAAGACCCGAATAAGCAGCTTCTCTCGCAATATATCAGCTGTGTCTGCTCCTCAGTTGCCTGGAATAAAGTGCGGTCCTAATGGCACAT
TCTTTGTTTCATCTGGGATACCTGACCTTGACAAGATACTGGGTGGTGGGTTTCCTTTGGGAAGCTTAGTTATGATAATGGAAGATGCGGAAGCTCCTCA
TCACATGCTGTTATTGAGGAATTTCATGTCTCAAGGACTTGTTCAAAACCAACCTCTTCTTTATGCCAGTCCAGCTAAAGACCCTAGAGGGTTTTTGGGT
ACTTTGCCTTGCCCCTCATCATCTAAAGATGATAAATCCCGTAATCATGATACAGAACAGGAAAAGGGACTGAGAATTGCTTGGCAGTATAAAAAGTATT
TCAGTGAAAATCAGAAAAATATTGATGATCATAAAGATAGTAATCAAGAGTTTTGCAATGATTTTGACTTGCGGAAACCATTGGAGAAGCATTTTTACAG
TGGGCAGCGTGTAGACTGTGTCAGCATCAAAGATTCTCCTAACCTGGCCACTCTTCATGACCGTTGTGCCACATTTTTAGCTCAATTTCCAAGAAATGAT
GGAAGCTTTTCTTGCATGGGTCGTATTGCTATTCAGTCATTATGTGCTCCACAATGTGAACTTTCCAAAATGGACTGGGATATGCTTTCCTTCATTAGAT
CTCTCAAAAGCATGCTACGGTCTGCAAATGCAGTTGCTATTATTACATTTCCATCTTCCCTTCTTTCACCATCCTTCTGTAAAAGATGGCAGCACATGGC
AGATGTGTTACTGTCTGTCAAAGCAATCCCAGATGAGGACAAGGAATTGGGAAAACTCCTAACTGGTTACCAAGACATGGTTGGCTTCCTTAATGTGCAC
AAAATAGCACGTATCAATACTCAGGTTCCCATGATTCTTGAGGCAACGACTTTCTCAATAAAATTGCATAAGCGACGGTTTTTAGTTTTAGAATGTCTAA
ATCAAGCCCCCATTGATGGTTCAAGTGGGACTTCATATGGCACATCTGGTGGCTGTTCTGGGTCCTCCAGAAGCGGTGCCCTTGATTTTTAG
AA sequence
>Potri.010G189500.4 pacid=42798848 polypeptide=Potri.010G189500.4.p locus=Potri.010G189500 ID=Potri.010G189500.4.v4.1 annot-version=v4.1
MAATKTRISSFSRNISAVSAPQLPGIKCGPNGTFFVSSGIPDLDKILGGGFPLGSLVMIMEDAEAPHHMLLLRNFMSQGLVQNQPLLYASPAKDPRGFLG
TLPCPSSSKDDKSRNHDTEQEKGLRIAWQYKKYFSENQKNIDDHKDSNQEFCNDFDLRKPLEKHFYSGQRVDCVSIKDSPNLATLHDRCATFLAQFPRND
GSFSCMGRIAIQSLCAPQCELSKMDWDMLSFIRSLKSMLRSANAVAIITFPSSLLSPSFCKRWQHMADVLLSVKAIPDEDKELGKLLTGYQDMVGFLNVH
KIARINTQVPMILEATTFSIKLHKRRFLVLECLNQAPIDGSSGTSYGTSGGCSGSSRSGALDF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G11220 ELO1 ELONGATA 1, Paxneb protein-rel... Potri.010G189500
[exp]
0 1
AT5G19750 Peroxisomal membrane 22 kDa (M... Potri.016G029700
[exp]
1.00 0.8443
AT2G22400 S-adenosyl-L-methionine-depend... Potri.007G096100
[exp]
3.16 0.8205
AT5G48330 RUG2 RCC1/UVR8/GEF-like 2, Regulato... Potri.014G198300
[exp]
6.00 0.8050
AT3G07750 3'-5'-exoribonuclease family p... Potri.014G166200
[exp]
6.48 0.7895
AT1G09280 unknown protein Potri.005G011300
[exp]
6.92 0.7384
AT4G15010 Mitochondrial substrate carrie... Potri.001G222400
[exp]
8.06 0.8021
AT3G04710 TPR10 tetratricopeptide repeat 10, a... Potri.013G042300
[exp]
8.48 0.7831
AT4G00620 EMB3127 EMBRYO DEFECTIVE 3127, Amino a... Potri.002G157100
[exp]
8.83 0.7976
AT3G02320 N2,N2-dimethylguanosine tRNA m... Potri.004G117900
[exp]
10.39 0.7184
AT1G17690 NOF1 nucleolar factor 1, unknown pr... Potri.003G010000
[exp]
12.40 0.7718

Potri.010G189500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.