Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40095 207 / 5e-68 Alpha/beta hydrolase related protein (.1) AT3G55880 198 / 2e-64 SUE4 sulphate utilization efficiency 4, Alpha/beta hydrolase related protein (.1.2) AT1G80280 92 / 2e-21 alpha/beta-Hydrolases superfamily protein (.1) AT1G52750 81 / 8e-18 alpha/beta-Hydrolases superfamily protein (.1) AT1G15490 71 / 4e-14 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G067700 [exp] 290 / 9e-101 AT2G40095 229 / 1e-76 Alpha/beta hydrolase related protein (.1) Potri.003G059400 [exp] 105 / 3e-26 AT1G15490 845 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G174900 [exp] 100 / 1e-24 AT1G80280 828 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028294 [exp] 248 / 3e-84 AT2G40095 262 / 1e-89 Alpha/beta hydrolase related protein (.1) Lus10040195 [exp] 219 / 2e-72 AT2G40095 231 / 8e-77 Alpha/beta hydrolase related protein (.1) Lus10030405 [exp] 213 / 3e-70 AT2G40095 220 / 3e-73 Alpha/beta hydrolase related protein (.1) Lus10014849 [exp] 211 / 2e-69 AT2G40095 212 / 8e-70 Alpha/beta hydrolase related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10457 [poplar] [flax] MENTAL Cholesterol-capturing domain
Representative CDS sequence Show only first row Show all	>Potri.010G189600.1 pacid=42798203 polypeptide=Potri.010G189600.1.p locus=Potri.010G189600 ID=Potri.010G189600.1.v4.1 annot-version=v4.1 ATGGGTTTCGCAAAAGAAGAGAAATCAAAAAAGGTTTTGAGAGGAGTAAAGACTGTATTCTTCTTGATCACCATGTTAATTTCTTTCCTTCTTTTCTCTG CTCCTATTCTTCTTGTTATAGCCGATACTCTCCTTCCTTTTTCTCTCCTCTCTGCCTCTCTCTCTCCTTCTTCTTTATCATCAGAGACACTCTCTTCTCA TTTCAATAACTATGATTTTCGTTACTCCCTCATTGACATACCCCTCATATCCATTATAAGATCAGTTGTCATCATCTGTGTTTATAGTTTGTGTGATGGA CCAAGGCTCTCAACAGGACCATACCTGGGGATTACAACGATCTGTTCTGTGTCATCACTAATTTATGTTTCCTTCAAGGCACCACGCGTGTTTAGAGTTT CAAGTACGGGCCGAGGAGAATATGTTAGAGCCATGGAAATTGCCTTGTTTATTTGCTCTCTACTTCTAGCAATTGGTCATGTTGTTGTGGCGTATAGAAC AAGCTGCAGAGAAAGAAGAAAGCTTTGGGTCTACAAAATTGACATTGAAGCTGTTTCAGCTTGCAAGAATGTGGTGTTTCCAAGGTATCAAAAGATTCTG CTGGAAGAAAGAGTGAAATGA
AA sequence Show only first row Show all	>Potri.010G189600.1 pacid=42798203 polypeptide=Potri.010G189600.1.p locus=Potri.010G189600 ID=Potri.010G189600.1.v4.1 annot-version=v4.1 MGFAKEEKSKKVLRGVKTVFFLITMLISFLLFSAPILLVIADTLLPFSLLSASLSPSSLSSETLSSHFNNYDFRYSLIDIPLISIIRSVVIICVYSLCDG PRLSTGPYLGITTICSVSSLIYVSFKAPRVFRVSSTGRGEYVRAMEIALFICSLLLAIGHVVVAYRTSCRERRKLWVYKIDIEAVSACKNVVFPRYQKIL LEERVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40095			Alpha/beta hydrolase related p...		Potri.010G189600 [exp]	0	1
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.009G109400 [exp]	1.00	0.9360
AT2G31945			unknown protein		Potri.009G024300 [exp]	1.73	0.9197
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Potri.001G041800 [exp]	2.00	0.9240
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.014G103000 [exp]	4.00	0.9084	Pt-ATHB.5
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Potri.010G163000 [exp]	4.24	0.9002	Pt-WRKY3.2
AT1G27100			Actin cross-linking protein (....		Potri.010G035100 [exp]	5.65	0.8877
AT3G24090			glutamine-fructose-6-phosphate...		Potri.019G054500 [exp]	6.70	0.8883
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Potri.018G019800 [exp]	7.48	0.8980
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Potri.002G224000 [exp]	8.48	0.8761
AT5G65380			MATE efflux family protein (.1...		Potri.002G102100 [exp]	9.48	0.9069

Compare expression of checked genes

Potri.010G189600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.