Plant FIBer expression Database

Potri.010G189700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G05680 1021 / 0 EMB2789, MOS7 MODIFIER OF SNC1,7, EMBRYO DEFECTIVE 2789, nuclear pore complex protein-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G067600
[exp]
1426 / 0 AT5G05680 997 / 0.0 MODIFIER OF SNC1,7, EMBRYO DEFECTIVE 2789, nuclear pore complex protein-related (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028296
[exp]
1117 / 0 AT5G05680 1013 / 0.0 MODIFIER OF SNC1,7, EMBRYO DEFECTIVE 2789, nuclear pore complex protein-related (.1)
Lus10040194
[exp]
1116 / 0 AT5G05680 1010 / 0.0 MODIFIER OF SNC1,7, EMBRYO DEFECTIVE 2789, nuclear pore complex protein-related (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10168 Nup88 Nuclear pore component
Representative CDS sequence
>Potri.010G189700.1 pacid=42798961 polypeptide=Potri.010G189700.1.p locus=Potri.010G189700 ID=Potri.010G189700.1.v4.1 annot-version=v4.1
ATGAGATTCAACTTCGAGTTGACAGAACCAGACCCAGACTCTTCTTCTCGAAAATCTCTTACTCCCAAAGAAGATATCCTATGGGTCCCACTCCAAAACC
ACCCGCTCTTCACTTCCTCCGCCTCCACCTCACTCGAAGGTGACGCTGCACCGCAACCACCATCCAATCTACTAGCTTGGGATGGCGCTTCTAGATTATA
TTACTGGGATTCAAACCTCCGCTGCCTCCATCGAATTTCAATTGGCCTCGGCGATCCCGACCCTTCTTCTGTCCTCGCTGCTTCTCCCTCTAAGGTATTA
CAAACAGATGTGGAGATTAATTTTGAGGTTAACAAAATTTCTATCAATAGAAATGGCTCTGCTTTGCTTCTTTCCGGTGCCTATGGTTTATGTGTTATGT
ACCTTTATGGACGCTCTTCTAGTAAAGATGACTCCATCATTTGCAGGACTGTTTCCATTGGTTCGCAAATTTATTTTAATGAGAGAAATGTAATACACAT
GCGAAAAGTTTCGTGGCATCCTTACAGTGATACGCATTTAGGAATTCTTTCTTCTGATTCGGTTTTCAGACTGTTTGATTTGTCCTCAGATGTCCTGCAG
CCAGAGCAGGAATATTATCTACAGCCTGTTGAACCAGGTAGATCCAGGAATGCTGCATCAATCTGTCCAGTTGATTTTTCTTTTGGGGGCGACCACTTGT
GGGACAGGTTTAGTGTTTTCGTGTTATTCAGCGATGGTTCAGTTTACATCCTTTGCCCAATTGTTCCATTCAAAAGTGTCTACAAATGGGAATCTGTTTT
GGAGATATATAGTGATGCTGAAATGTTTGGACTGAAATCAGCAAATCCAGTTGCTGTTAACAACTCAAATCTGGCAATCTTTTGGCTGGAAGCTACATTT
CCTGAGTTAGCCCATGAATCAAAGGAGGGGGAACTATCAACACTAAAAGCTCACCCTTATGCTGTATTTGATGCATCACTTTGTTTGCAGGGCCCTTTAC
GCAAAGTATGTCATGGTGTGGAAGATGAAGACTTAGCAGTTAGGGGTGCAGAATGCGAAGGTCATGCAGTCAGTTTTCTTTATGATTTAGCCAGCAAAGA
CTCAATTCTGGTGACTGCCTGGAGTGGTGGGCAATTGCAAATAGATGCCCTATCCGATGAAATCCAGCCAGTCTGGACAGTTGGTAGTCCACCTCGTCTT
CGTCTTAATTCCCACAACCATATTCTTGGTCTTGCAATGCTTTGTGAATCAATCTCGGGTGAGCTTCCTGTTGTGAAGCTTGATCAACCGCATGATTATA
CTGTCTGGTTAGGTCATCCACCACCTTTGTTGAGACTTGCAATTGTGGATTTGGCCTTACCAAGGAAAACAGAAAGCGGGTCTCATATTTCAATGTTTGC
TGATCCCCTTATGCCTGAAAGAATCTATTCTGTTCATGATGGAGGGATAGATTCAATTGTTTTGCATTTTCTTCCATTTACCAGTCAGTCCAGTGGCAAG
GATGAGACAGTCCGGTCTCCCTCAGTGCATCCTGTCCTTAGCACATGCCAGGTGGAGAACTCCACGCCTTCTCCCCTATATGGCTTTATAGCGTTGTCAG
ATTCATTTGGGTACTCATGGATTGCAGTGATTACCTCCAACAAAGAATGTGTTGTGCTAGAAATGAAAACATTAAATTTATTGGTGCCTGTACATGTTGA
TATGGAGAAGGAATCTGCAAGTTCTGAAGAATGGACAAATAGAAATCCTCCAGACATCATAAGCAAAGAACTACTTAGTGGTCCTAAGGTGGTTCTTGTT
CCTCAGGGTTCACCAAATCTTCGATCTGTTGCTGCTGATTCTATTGAAGGGCGGTCAACTCTTCACCAGTACTTGAACCTTTTCCATGAAAACTATGTTG
AGTATGCACATAAGGTCTACTTTGAACTCAAGCATCATGGCCCCCAGTTGAAGAGGATCATTGATGATCAGCATGCTCGATTAGGCGAGGCTCAGGAGAA
GCTTTCAAAAGTGGTGAATAAGCAGTCAGGATTGGTGAACAGGACTAATCATGCAATGCACAGACACAATCTTCTGGAACAGCGCTTGCATTGCCTGAGG
AACTTGCCTGGAGCTCATAAGAAGCCTTTGTCTAAAGCAGAACGTGAATTCAAGTCCGAGCTTGACCAATTTACCAGAGTTGAATTGGATGCTTTGCGTG
CTTCCATTGACACACTAAGAGCAAGGCTGGGAAGGTTCACACAATCTTTGAAAGGTGATGTACCAAATCAGCAAAGGAAAATAGTGGGAAGGAACAATGT
CCTAGATGCCCAGATATCGCAGCTGAAATCCTCAATTACAAAACTCTCCCTTGTCAATAGTGAGAATACAAAGAAAGTTAAGCTTGTTGAATCCGCGTTA
AAAAATCAGGAAAGCAGTAGATGA
AA sequence
>Potri.010G189700.1 pacid=42798961 polypeptide=Potri.010G189700.1.p locus=Potri.010G189700 ID=Potri.010G189700.1.v4.1 annot-version=v4.1
MRFNFELTEPDPDSSSRKSLTPKEDILWVPLQNHPLFTSSASTSLEGDAAPQPPSNLLAWDGASRLYYWDSNLRCLHRISIGLGDPDPSSVLAASPSKVL
QTDVEINFEVNKISINRNGSALLLSGAYGLCVMYLYGRSSSKDDSIICRTVSIGSQIYFNERNVIHMRKVSWHPYSDTHLGILSSDSVFRLFDLSSDVLQ
PEQEYYLQPVEPGRSRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSVYILCPIVPFKSVYKWESVLEIYSDAEMFGLKSANPVAVNNSNLAIFWLEATF
PELAHESKEGELSTLKAHPYAVFDASLCLQGPLRKVCHGVEDEDLAVRGAECEGHAVSFLYDLASKDSILVTAWSGGQLQIDALSDEIQPVWTVGSPPRL
RLNSHNHILGLAMLCESISGELPVVKLDQPHDYTVWLGHPPPLLRLAIVDLALPRKTESGSHISMFADPLMPERIYSVHDGGIDSIVLHFLPFTSQSSGK
DETVRSPSVHPVLSTCQVENSTPSPLYGFIALSDSFGYSWIAVITSNKECVVLEMKTLNLLVPVHVDMEKESASSEEWTNRNPPDIISKELLSGPKVVLV
PQGSPNLRSVAADSIEGRSTLHQYLNLFHENYVEYAHKVYFELKHHGPQLKRIIDDQHARLGEAQEKLSKVVNKQSGLVNRTNHAMHRHNLLEQRLHCLR
NLPGAHKKPLSKAEREFKSELDQFTRVELDALRASIDTLRARLGRFTQSLKGDVPNQQRKIVGRNNVLDAQISQLKSSITKLSLVNSENTKKVKLVESAL
KNQESSR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G05680 EMB2789, MOS7 MODIFIER OF SNC1,7, EMBRYO DEF... Potri.010G189700
[exp]
0 1
AT1G80150 Tetratricopeptide repeat (TPR)... Potri.001G171300
[exp]
1.00 0.9159
AT3G17830 Molecular chaperone Hsp40/DnaJ... Potri.015G035300
[exp]
1.41 0.9104
AT1G03000 PEX6 peroxin 6 (.1) Potri.014G133000
[exp]
3.16 0.8956
AT4G22860 Cell cycle regulated microtubu... Potri.001G114400
[exp]
3.74 0.8864
AT5G45190 Cyclin family protein (.1.2) Potri.005G097400
[exp]
4.00 0.8997
AT1G73210 Protein of unknown function (D... Potri.004G068700
[exp]
4.24 0.8947
AT5G19620 TOC75-V, EMB213... translocon at the outer envelo... Potri.003G204900
[exp]
4.69 0.8888
AT5G63110 RPD3B, CAT1, AX... RNA-MEDIATED TRANSCRIPTIONAL S... Potri.012G083800
[exp]
4.79 0.8763 Pt-HDA6.2,HDA909
Potri.006G211800
[exp]
5.09 0.8872
AT5G48385 FRIGIDA-like protein (.1) Potri.015G110132
[exp]
6.32 0.8938

Potri.010G189700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.