Plant FIBer expression Database

Potri.010G190100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G05700 615 / 0 ATATE1, DLS1, ATE1 DELAYED LEAF SENESCENCE 1, arginine-tRNA protein transferase 1 (.1)
AT3G11240 608 / 0 ATATE2, ATE2 arginine-tRNA protein transferase 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G067000
[exp]
832 / 0 AT5G05700 551 / 0.0 DELAYED LEAF SENESCENCE 1, arginine-tRNA protein transferase 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040189
[exp]
723 / 0 AT3G11240 594 / 0.0 arginine-tRNA protein transferase 2 (.1)
Lus10004392
[exp]
533 / 0 AT5G05700 434 / 3e-146 DELAYED LEAF SENESCENCE 1, arginine-tRNA protein transferase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0257 Acetyltrans PF04376 ATE_N Arginine-tRNA-protein transferase, N terminus
CL0257 Acetyltrans PF04377 ATE_C Arginine-tRNA-protein transferase, C terminus
Representative CDS sequence
>Potri.010G190100.1 pacid=42799309 polypeptide=Potri.010G190100.1.p locus=Potri.010G190100 ID=Potri.010G190100.1.v4.1 annot-version=v4.1
ATGGCAGGGAAGACAAGGAAAAGCGAAGCGAGCACTAGCAGCAGCAGCGGTGATAATAACAACAATCGTGGAGAAACCGTCGTTTCTGACTGTGGCCGCC
GTAGAAGCTCCTGTGGTTATTGCAAATCCACTTCTAGCACTAGCGTCTCTCACGGTTTGTGGGCACACAGCATAACGGTTGATGACTACCAAGACCTTCT
TGACAGAGGATGGAGAAGATCTGGTTCTTTCCTTTACAAACCTGAGATGGAAAAAACCTGTTGCCCGTCTTATACCATCCGTCTGAGGGCAAGTGATTTT
GTTCCGTCAAAAGAGCAACAGCGAGTGTCTAAAAGAATTCAGAGGTTTGTGGATGGTACATTGGAAGTGAAAAAATCAGTGGAAGCTACGAAGGACCCCA
GTATTTCTGCTAGTGCCTGTAGTGAAGCTTCAAGCTCAGGAACAAAGGAATCCTTGTCCAACAAAAACAAGGAGAAAAATGTGGGAGATCACATTACTAA
TTATTTGTCAGAACAAGTTGACAATGTGATTCGGACATGCAGTGAAAGTGGGCAATTTCCTTGCAGTGTTCAATTACCAAAAGCTTCTGTAAAGAAGGTT
TCACAAGCCAAAAGAAAACTACTGGTGGAAGGAGCAGAAGATCTCATGTACTCTAGCAACATTGCATTTCAAATAGCAGCCACTATAAGGCAGGCACAAT
CAATTGCTAAGGATGCAAGTCGAAGTGCAGAAGATAACCCTCTGTCTCCGAAAATTATTGCTGAAAAACTGGCTGCTTCTTTAGATCAATTAGCAAACAC
TAATGGTCTGGCAATTAGAGCTTGTAATGGGCACATTAATTTTTATACTGCAACAACTCAAGTTTCTTCCAACGAAGATAGCCATATTGCTTTGGGTGCC
CAAGAATCTGCAACAGAGAGGAAAGACTTCTCTTTGAGGAAGAGCTCTGTGCATCCTCAGGGAAAAAGACGGAGGCTTGAGATCCGTTTGAAAAGGTCCA
GCTTCGATCCGGAGGAGTTTGCATTGTATAGACGATATCAGATAAATGTGCATAATGATACTCTGGATCTTGTCTCTGAAAGCTCATATAGAAGGTTTCT
GGTCGATACTCCCTTGGTACCTGTCCAACCAACTGGTGATAGCAGAGTCCCCCTTTGTGGTTTTGGTTCCTTTCATCAGCAATATGTAATTGATGGCCGG
CTAGTTGCTGTTGGGGTGATAGATATCCTTCCTAAATGTTTGTCAAGTAAATATTTGTTTTGGGATCCAGATTTTGCCTTTCTTTCACTAGGCAAGTATT
CAGCCTTGCAAGAAATAGGTTGGGTGAAAGAGAATGAAGTGCACTGTCCCAGTCTTCAGTATTATTATCTTGGCTATTATATTCATTCCTGCAGTAAGAT
GAGATATAAAGCAGCATATTGCCCATCTGAACTTCTCTGTCCCCTTCGTTACCAGTGGGTTCCATTTGATATAGCCCAACCTTTGCTGGATAGAAAGCCA
TATGTTGTCTTGTCAGATTTTGTGCTATTACAAAATGGAGAGTCATCACAACCTCTTGTCCCTGAGAATGTGATGGAAGTACAGGGTGATGAGAACCACA
ATGAAGACTCTAATGATGTTCTGATAGATGGTGATGATGAGGAGGAGGATGGTGATGATGATGAGGAGGATGATGATGAATTTGAAAGCGATGATGATGA
TTCAGGTCCAGATAGCTTTGGTCAGACATCAGTTGAAATAGAAAATGGTAATGTCAGTGACATTTTAATTGGGTTAAAGGGATCTAGATTGAGATACAAG
GATCTACAACGAGCTATTGGCCCGGGAGAGAGATTGGAGTCCCAGTTGCGTAGATATAAGAGGGTTGTGGGTGAAAAGCTGGCAGAACGAATGGTCTATT
CACTTGGATGA
AA sequence
>Potri.010G190100.1 pacid=42799309 polypeptide=Potri.010G190100.1.p locus=Potri.010G190100 ID=Potri.010G190100.1.v4.1 annot-version=v4.1
MAGKTRKSEASTSSSSGDNNNNRGETVVSDCGRRRSSCGYCKSTSSTSVSHGLWAHSITVDDYQDLLDRGWRRSGSFLYKPEMEKTCCPSYTIRLRASDF
VPSKEQQRVSKRIQRFVDGTLEVKKSVEATKDPSISASACSEASSSGTKESLSNKNKEKNVGDHITNYLSEQVDNVIRTCSESGQFPCSVQLPKASVKKV
SQAKRKLLVEGAEDLMYSSNIAFQIAATIRQAQSIAKDASRSAEDNPLSPKIIAEKLAASLDQLANTNGLAIRACNGHINFYTATTQVSSNEDSHIALGA
QESATERKDFSLRKSSVHPQGKRRRLEIRLKRSSFDPEEFALYRRYQINVHNDTLDLVSESSYRRFLVDTPLVPVQPTGDSRVPLCGFGSFHQQYVIDGR
LVAVGVIDILPKCLSSKYLFWDPDFAFLSLGKYSALQEIGWVKENEVHCPSLQYYYLGYYIHSCSKMRYKAAYCPSELLCPLRYQWVPFDIAQPLLDRKP
YVVLSDFVLLQNGESSQPLVPENVMEVQGDENHNEDSNDVLIDGDDEEEDGDDDEEDDDEFESDDDDSGPDSFGQTSVEIENGNVSDILIGLKGSRLRYK
DLQRAIGPGERLESQLRRYKRVVGEKLAERMVYSLG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G05700 ATATE1, DLS1, A... DELAYED LEAF SENESCENCE 1, arg... Potri.010G190100
[exp]
0 1
AT5G22250 AtCAF1b CCR4- associated factor 1b, Po... Potri.006G205600
[exp]
1.73 0.8132
AT5G15680 ARM repeat superfamily protein... Potri.017G106100
[exp]
4.24 0.8080
AT3G21630 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINA... Potri.002G226600
[exp]
8.94 0.7464 NFR1.1
AT4G34280 transducin family protein / WD... Potri.007G051500
[exp]
10.39 0.7538
AT4G38180 FAR1_related FRS5 FAR1-related sequence 5 (.1) Potri.015G139300
[exp]
11.22 0.7312
AT2G22300 CAMTA SR1, CAMTA3 CALMODULIN-BINDING TRANSCRIPTI... Potri.007G093400
[exp]
13.41 0.7727
AT3G19510 HD HAT3.1 Homeodomain-like protein with ... Potri.001G298400
[exp]
16.12 0.7247
AT4G33210 SLOMO SLOW MOTION, F-box family prot... Potri.018G048700
[exp]
16.97 0.7580
AT3G14460 LRR and NB-ARC domains-contain... Potri.014G005400
[exp]
20.00 0.7643
AT5G60230 ATSEN2, SEN2 splicing endonuclease 2 (.1.2) Potri.014G083401
[exp]
22.44 0.7125

Potri.010G190100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.