Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40070 369 / 4e-121 unknown protein AT3G09000 207 / 8e-60 proline-rich family protein (.1) AT5G01280 134 / 5e-34 unknown protein AT2G38160 90 / 2e-19 unknown protein AT3G08670 71 / 1e-12 unknown protein AT1G27850 57 / 2e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G066900 [exp] 490 / 2e-168 AT2G40070 321 / 1e-102 unknown protein Potri.016G114900 [exp] 295 / 2e-92 AT2G40070 352 / 7e-114 unknown protein Potri.010G177000 [exp] 89 / 6e-19 AT2G40070 82 / 9e-17 unknown protein Potri.016G139500 [exp] 84 / 1e-16 AT3G08670 245 / 2e-73 unknown protein Potri.006G110700 [exp] 76 / 2e-14 AT3G08670 251 / 1e-75 unknown protein Potri.008G178600 [exp] 69 / 6e-12 AT1G27850 567 / 0.0 unknown protein Potri.010G056200 [exp] 65 / 9e-11 AT1G27850 240 / 1e-64 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030402 [exp] 385 / 4e-127 AT2G40070 561 / 0.0 unknown protein Lus10004390 [exp] 371 / 3e-126 AT2G40070 321 / 5e-107 unknown protein Lus10040188 [exp] 381 / 9e-126 AT2G40070 533 / 0.0 unknown protein Lus10037838 [exp] 380 / 8e-125 AT2G40070 551 / 0.0 unknown protein Lus10002493 [exp] 199 / 2e-57 AT2G40070 300 / 2e-95 unknown protein Lus10004824 [exp] 196 / 4e-56 AT3G09000 286 / 3e-90 proline-rich family protein (.1) Lus10027767 [exp] 153 / 5e-39 AT2G40070 288 / 5e-86 unknown protein Lus10035528 [exp] 142 / 2e-35 AT2G40070 280 / 4e-83 unknown protein Lus10021382 [exp] 87 / 9e-18 AT3G08670 432 / 4e-145 unknown protein Lus10025209 [exp] 79 / 5e-15 AT3G08670 398 / 6e-131 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G190300.1 pacid=42799751 polypeptide=Potri.010G190300.1.p locus=Potri.010G190300 ID=Potri.010G190300.1.v4.1 annot-version=v4.1 ATGAATCGTAGTTTTAGGGCACAGGACTCGCAAATGCAAATGCAAGCAGCAGTGGTGAAGCAAAGGCAGCAATTAAGAGCTACAATGATGAAAGAAAAAG AAGAAGAGCTTGCTTTATTTTTAGAAATGAAGAAGCGTGAGAAGGAGCAGAATAATTTGCTTTTAATTAATAACACTGAAGAATTTGATGCACCATTAGG GTCAAAGCATGGAACTTTGCCTATATTTAATATTTCTTCTTCTACGCCTGTGAGGAAAACAGGAGCTGATGATTTTCTCAACTCCGAGAATGATAAAAAC GACTATGACTGGCTCCTAACGCCTCCCGGTACCCCTCTTTTTCCTTCTTTGGAGATGGAATCACAAAAGACCATTATGAGTCAGATCGGTACTCCAAAGG CCCGCCCAACTGCTCTGAAATCTAGACTAGCTAACTCTCAGCAAGAGCCTGTTGCAAGGGGCAACTTGGTATCTAAACAATCAGCTTCTTCTCCTGGGTT GAACTCTTCAGGTGCAGCAATGCGCAGGCCTTCATCATCAGGTGGTCCAGGATCTAGGCCTTCAACACCAACCGGACGCCCCACAGTGACTACAGGTCCT AAGCCTTCAAGATCATCAACACCAACCTCTAGGGCCACCCTGTCCTCATCTAAGCCCACAATTTCTGCAGCTAAGCTGACTGTCTCTGCAGCTAAATCAA CTACTTCTACAATGAAGTCCACAGTTCCTGCAAGATCCTCAACGCCATCAAGGTCTACAGCACGATCTTCAACCCCTACTGCAAGGCCCTCTATACCTCC ATCCAAGTCTACATCAAGGGCAGCAACCCCCACTCGACGACCATCCACTCCAACAAGGTCACCTAGCTTGTCTGCTGCTCCTGTTAAGTCATCATCTTCA GTTACCAGGTCAGCTCCTACTGTTACCAAGTCAGCTCCCACAGCTGCTAGGAATCCCGTGATGGCACGTGGCTCTTCTCCAACAGTGAAATCTAGGCCAT GGAAGCCATCAGAGATGCCTGGTTTTTCACTTGATGCTCCACCAAATTTAAGAACTTCAGCACCTGAACGGCCACTTTCAGCTACTAGGGGTAGGCCTGG AGCACCCAGTGCCCGATCTTCCTCTGTTGAGCCTACTCCTAATGGACGACCAAGACGTCAATCTTGCTCCCCATCAAGAGGACGAGCTCCCAATGGCATT ATGCACCCCAGTGGGAGCTCTGTTCCTGCATTTAGTCGTGGGCATTCAAAAATTAATGACAATGTTAGCCCTGTCATTATTGGAACCAAAATGGTCGAGA GAGTGATAAATATGCGAAAACTGGCACCTCCCAAGCAAGATGGCAAACACTCTCCTAGTGGTAATCTGACTGGGAAGTCATCATCTCCAGACAGCTCTGG CTTTGGAAGAACACTCTCAAAGAAATCTTTGGATATGGCCATAAGGCACATGGACATAAGGCGCACCATTCCTGGTAATTTACGGCCTTTGATGACTAAT ATCCCAGCATCTTCGATGTACAGTGTGAGATCAGGGCCTGCAAGAAGCAGGACAGTTAGTGTTTCAGACTCCCCTCTTGCAACGAGCAGTAATGCTAGTT CAGAAGTGAGTATCAACAACAATGGTCTTTGTTTGGATGGGATTGAACTAGAAGATGATATTGGCAGTGAGAGAGGTGGCCGGTCACCTCTACGAGGCAG ATGA
AA sequence Show only first row Show all	>Potri.010G190300.1 pacid=42799751 polypeptide=Potri.010G190300.1.p locus=Potri.010G190300 ID=Potri.010G190300.1.v4.1 annot-version=v4.1 MNRSFRAQDSQMQMQAAVVKQRQQLRATMMKEKEEELALFLEMKKREKEQNNLLLINNTEEFDAPLGSKHGTLPIFNISSSTPVRKTGADDFLNSENDKN DYDWLLTPPGTPLFPSLEMESQKTIMSQIGTPKARPTALKSRLANSQQEPVARGNLVSKQSASSPGLNSSGAAMRRPSSSGGPGSRPSTPTGRPTVTTGP KPSRSSTPTSRATLSSSKPTISAAKLTVSAAKSTTSTMKSTVPARSSTPSRSTARSSTPTARPSIPPSKSTSRAATPTRRPSTPTRSPSLSAAPVKSSSS VTRSAPTVTKSAPTAARNPVMARGSSPTVKSRPWKPSEMPGFSLDAPPNLRTSAPERPLSATRGRPGAPSARSSSVEPTPNGRPRRQSCSPSRGRAPNGI MHPSGSSVPAFSRGHSKINDNVSPVIIGTKMVERVINMRKLAPPKQDGKHSPSGNLTGKSSSPDSSGFGRTLSKKSLDMAIRHMDIRRTIPGNLRPLMTN IPASSMYSVRSGPARSRTVSVSDSPLATSSNASSEVSINNNGLCLDGIELEDDIGSERGGRSPLRGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40070			unknown protein		Potri.010G190300 [exp]	0	1
AT1G50120			unknown protein		Potri.007G071000 [exp]	5.38	0.9276
					Potri.001G297466 [exp]	5.47	0.9195
AT3G45850			P-loop containing nucleoside t...		Potri.009G026000 [exp]	6.92	0.9175
AT2G40070			unknown protein		Potri.008G066900 [exp]	7.07	0.8898
AT2G32510		MAPKKK17	mitogen-activated protein kina...		Potri.002G228200 [exp]	11.48	0.9099
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Potri.003G085200 [exp]	11.57	0.9263	Pt-NPSN11.1
AT5G15050			Core-2/I-branching beta-1,6-N-...		Potri.004G130300 [exp]	12.00	0.9091
AT4G10955			alpha/beta-Hydrolases superfam...		Potri.001G090500 [exp]	15.49	0.8983
AT1G71900			Protein of unknown function (D...		Potri.003G009700 [exp]	15.58	0.9125
AT2G21410		VHA-A2	vacuolar proton ATPase A2 (.1)		Potri.002G028600 [exp]	16.27	0.9174

Compare expression of checked genes

Potri.010G190300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.