Plant FIBer expression Database

Potri.010G190400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G40060 214 / 1e-69 CLC2 clathrin light chain 2, Clathrin light chain protein (.1)
AT3G51890 181 / 2e-56 Clathrin light chain protein (.1)
AT2G20760 174 / 9e-53 Clathrin light chain protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G066800
[exp]
356 / 3e-125 AT2G40060 191 / 3e-60 clathrin light chain 2, Clathrin light chain protein (.1)
Potri.016G114700
[exp]
221 / 3e-72 AT2G40060 217 / 2e-70 clathrin light chain 2, Clathrin light chain protein (.1)
Potri.011G049500
[exp]
179 / 6e-55 AT2G20760 201 / 2e-62 Clathrin light chain protein (.1)
Potri.019G102000
[exp]
174 / 5e-52 AT2G20760 212 / 2e-65 Clathrin light chain protein (.1)
Potri.004G040100
[exp]
170 / 3e-51 AT2G20760 216 / 7e-68 Clathrin light chain protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004389
[exp]
223 / 5e-73 AT2G40060 220 / 9e-72 clathrin light chain 2, Clathrin light chain protein (.1)
Lus10040187
[exp]
216 / 3e-70 AT2G40060 211 / 3e-68 clathrin light chain 2, Clathrin light chain protein (.1)
Lus10030401
[exp]
203 / 7e-65 AT2G40060 197 / 2e-62 clathrin light chain 2, Clathrin light chain protein (.1)
Lus10011194
[exp]
187 / 1e-57 AT2G20760 235 / 2e-75 Clathrin light chain protein (.1)
Lus10018480
[exp]
184 / 1e-56 AT2G20760 239 / 4e-77 Clathrin light chain protein (.1)
Lus10018582
[exp]
145 / 2e-41 AT2G20760 195 / 2e-59 Clathrin light chain protein (.1)
Lus10039815
[exp]
140 / 1e-39 AT2G20760 189 / 2e-57 Clathrin light chain protein (.1)
Lus10037839
[exp]
0 / 1 AT2G40060 135 / 4e-42 clathrin light chain 2, Clathrin light chain protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01086 Clathrin_lg_ch Clathrin light chain
Representative CDS sequence
>Potri.010G190400.1 pacid=42799339 polypeptide=Potri.010G190400.1.p locus=Potri.010G190400 ID=Potri.010G190400.1.v4.1 annot-version=v4.1
ATGTCAACATTTGCCAACCCAGGCGAACAAAACGAGTCCACTCGCATGTTTGATGAAGATGATTCCTACGTAGGCTACGATTCGCAGCCATTCGATGACT
CATTCGCCGCCGGCAATGATGTTTTCGAGTCTCAGCTACCGATCTACGGCGAGTTCTCTCCTCTTGAAAACGGAGGGTCTGGTGGACCGGAGGGTCCTAT
TTTTCCTCCACCGTCGGAGAAGGACGCTGAGCAGGGATTTGCTCTCAGAGAATGGAGAAGGCAAAACGCCATACTGTTGGAGGATAAGGAGAAGAGGGAA
AAGGAGGCACTGAGCCAAATAATCAAGGAAGCTGAAGATTATAAAGTTGAATCTTACAAGAAGAGGGAGATCGCTTGCGAGAATAATAAAATCACTAACA
GGGAAAAAGAGAAGTTATTTCTGGTCAACCGAGAAAAATTCCATGCTGAAGTTGATAAGAATTACTGGAAGTCAATTGCAGAGCTCATTCCTAATGAAGT
TGCAGCTATAGAGAAGAGGACAGGGAAGAAAGATCTGGAGAAGAAGCCTGCTATTGTTGTGATTCAAGGCCCCAAGTCTGGGAAACCAACTGAACTCTCA
AGGATGCGGCAAATACTCTTGAAATTGAAGCACAGTGCACCTCCTCACCTGAAGTATTCCCCAGCAGAAGCAGCCACTTCTATTGATGCTACAGTGGCAA
CCACATCCCTCAAGGCTAATACTGTGGTGACGGCTCCTGAGACTGTAGCTGTTGCTTGA
AA sequence
>Potri.010G190400.1 pacid=42799339 polypeptide=Potri.010G190400.1.p locus=Potri.010G190400 ID=Potri.010G190400.1.v4.1 annot-version=v4.1
MSTFANPGEQNESTRMFDEDDSYVGYDSQPFDDSFAAGNDVFESQLPIYGEFSPLENGGSGGPEGPIFPPPSEKDAEQGFALREWRRQNAILLEDKEKRE
KEALSQIIKEAEDYKVESYKKREIACENNKITNREKEKLFLVNREKFHAEVDKNYWKSIAELIPNEVAAIEKRTGKKDLEKKPAIVVIQGPKSGKPTELS
RMRQILLKLKHSAPPHLKYSPAEAATSIDATVATTSLKANTVVTAPETVAVA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G40060 CLC2 clathrin light chain 2, Clathr... Potri.010G190400
[exp]
0 1
AT5G25530 DNAJ heat shock family protein... Potri.018G034600
[exp]
3.87 0.8970
AT5G55070 Dihydrolipoamide succinyltrans... Potri.011G089200
[exp]
4.00 0.8968
AT5G67500 VDAC2, ATVDAC2 ARABIDOPSIS THALIANA VOLTAGE D... Potri.005G146800
[exp]
4.89 0.9045
AT2G15240 UNC-50 family protein (.1) Potri.009G095900
[exp]
6.92 0.9048
AT5G50850 MAB1 MACCI-BOU, Transketolase famil... Potri.001G061400
[exp]
12.44 0.8873
AT4G04210 PUX4 plant UBX domain containing pr... Potri.011G005000
[exp]
15.36 0.8479
AT2G14110 Haloacid dehalogenase-like hyd... Potri.017G043700
[exp]
17.26 0.8282
AT3G04830 Protein prenylyltransferase su... Potri.005G051300
[exp]
18.33 0.8406
AT1G71780 unknown protein Potri.002G062300
[exp]
20.78 0.8755
AT2G36900 ATMEMB11, MEMB1... membrin 11 (.1.2) Potri.013G062900
[exp]
22.44 0.8680

Potri.010G190400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.