Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05730 835 / 0 JDL1, WEI2, TRP5, AMT1, ASA1 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) AT2G29690 793 / 0 ATHANSYNAB, ASA2 anthranilate synthase 2 (.1) AT3G55870 723 / 0 ADC synthase superfamily protein (.1) AT2G28880 165 / 5e-43 ADCS, EMB1997 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) AT1G18870 64 / 1e-10 ATICS2, ICS2 ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, isochorismate synthase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G044300 [exp] 809 / 0 AT2G29690 808 / 0.0 anthranilate synthase 2 (.1) Potri.008G066600 [exp] 241 / 1e-77 AT3G55870 213 / 3e-68 ADC synthase superfamily protein (.1) Potri.001G250300 [exp] 156 / 2e-44 AT2G29690 187 / 2e-56 anthranilate synthase 2 (.1) Potri.010G221500 [exp] 159 / 5e-41 AT2G28880 1016 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Potri.012G070000 [exp] 54 / 1e-07 AT1G18870 628 / 0.0 ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, isochorismate synthase 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014842 [exp] 845 / 0 AT5G05730 864 / 0.0 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) Lus10016945 [exp] 833 / 0 AT2G29690 872 / 0.0 anthranilate synthase 2 (.1) Lus10014830 [exp] 831 / 0 AT2G29690 875 / 0.0 anthranilate synthase 2 (.1) Lus10009888 [exp] 741 / 0 AT5G05730 755 / 0.0 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) Lus10036525 [exp] 159 / 4e-41 AT2G28880 1026 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Lus10041403 [exp] 155 / 9e-40 AT2G28880 1078 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Lus10023622 [exp] 65 / 9e-11 AT1G74710 623 / 0.0 SALICYLIC ACID INDUCTION DEFICIENT 2, ENHANCED DISEASE SUSCEPTIBILITY TO ERYSIPHE ORONTII 16, ARABIDOPSIS ISOCHORISMATE SYNTHASE 1, ADC synthase superfamily protein (.1.2) Lus10024255 [exp] 45 / 0.0001 AT1G18870 459 / 2e-158 ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, isochorismate synthase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00425 [poplar] [flax] Chorismate_bind chorismate binding enzyme PF04715 [poplar] [flax] Anth_synt_I_N Anthranilate synthase component I, N terminal region
Representative CDS sequence Show only first row Show all	>Potri.010G190600.2 pacid=42798689 polypeptide=Potri.010G190600.2.p locus=Potri.010G190600 ID=Potri.010G190600.2.v4.1 annot-version=v4.1 ATGCAAACCCTAATCTTCTCTAACTGCTTGTCTCTGGCCAGTCACCGGCTCTGTCCAGTCCCGGTCACCGGCATTTCAACGAGGAGGTCCAGTTCAGTCT CGTGTGTCCGTCCACTCAAGTGCATTTCCCTTTCCAGTGATTCTCTAGTAGTTGATGCCACCAAGTTCAAGGAAGCTGCTAAAAATGGAAATTTGGTACC TCTTCACACCTGTATATTCTCTGACCAGCTCACTCCAGTCACTGCTTATCGGTGTTTGGTGAAAGAAGATGATAGAGATGCTCCTAGCTTTCTATTTGAG TCCGTGGAGCCTGGTTCTCGGGTTTCAAGTGTGGGGCGTTACAGTGTGGTTGGAGCTCAACCAGCAATTGAGATTGTAGCAAAAGAAGATAAGGTTAGTC TGATGGACCATGAAGCCGGTACATTGATTGAGGAGATTGTCGAAGATGCGATGGTGGTTCCAAGAAGAATATCAGAGGCTTGGAAACCCCAACTCATTGA TGGACTTCCAGACGCATTTTGTGGTGGCTGGGTTGGTTATTTCTCATATGACACTGTTCGATACACGGAGAAGAAAAAGCTGCCATTTTCAAGGGCACCC AAGGATGACAGGAATCTTCCAGACATACATCTGGGACTTTATGATGATGTGATCGTGTTTGATCATGTGGAAAAGAAAGCATACATAATTCACTGGGTGA AGATAGATAGATACTCTTCTATTGAGGATGCATACAGTGATGGAATGAAACGTTTGGAAAAATTGTTGGCCAGAGTACTGGATATTGATCCGCCAAGGCT ATCTCCAGGTTCTGTAAAATTACACACTCAGCATTTTGGTCCCTTGTTGAAGAACTCGAACATGACCAGTGATGAATACAAGCAAGCAGTACTACGGGCA AAAGAACATATCCAGGCTGGGGATATTTTCCAGATAGTACTGAGTCAGCGCTTTGAACGCCGAACCTTTGCTGACCCATTTGAAATATATAGAGCATTGA GAGTCGTAAATCCCAGTCCTTACATGACTTACTTGCAAGCTAGAGGGTGTATTCTTGTTGCTTCAAGTCCAGAAATTCTTACACGTGTAAAGAATAATAG GGTAGTCAATCGGCCACTGGCTGGGACTGTCAGAAGAGGCAAGACACCTGAAGAAGATGAAGTGTTGGAGGAACAATTACTAAAGGATCCAAAGCAGTGT GCAGAACATACCATGCTTGTCGATTTGGGAAGAAATGATGTTGGAAAGGTTTCAAAACATGGCTCTGTGAAGGTGGAAAGGCTTATGAATGTTGAACGAT ATTCCCATGTTATGCACATAAGCTCCACGGTCACGGGAGAGTTGCATGATCATCTCACTTGCTGGGATGCCCTGCGTGCTGCATTGCCTGTTGGAACTGT CAGTGGAGCACCAAAGGTGAAGGCAATGGAATTGATTGACCAAATGGAGGTGTCGAGGCGTGGCCCATACAGTGGAGGACTAGGTGGGGTTTCCTTCACT GGTGATATGGACATTGCACTGGCTCTTAGGACCATGGTATTCCCAACCGGAACTCAATACAACACAATGTACTCATACAAGGATGCCCAGCTGCGCCGTG AATGGATTGCTTACCTTCAAGCTGGTGCTGGTATAGTTGCAGACAGTGTACCTGACGACGAGCATCGTGAATGCCAGAACAAAGCTGCTGGACTTGCTCG TGCCATCGACTTGGCAGAATCAACTTTTGTTAACAAACCATGA
AA sequence Show only first row Show all	>Potri.010G190600.2 pacid=42798689 polypeptide=Potri.010G190600.2.p locus=Potri.010G190600 ID=Potri.010G190600.2.v4.1 annot-version=v4.1 MQTLIFSNCLSLASHRLCPVPVTGISTRRSSSVSCVRPLKCISLSSDSLVVDATKFKEAAKNGNLVPLHTCIFSDQLTPVTAYRCLVKEDDRDAPSFLFE SVEPGSRVSSVGRYSVVGAQPAIEIVAKEDKVSLMDHEAGTLIEEIVEDAMVVPRRISEAWKPQLIDGLPDAFCGGWVGYFSYDTVRYTEKKKLPFSRAP KDDRNLPDIHLGLYDDVIVFDHVEKKAYIIHWVKIDRYSSIEDAYSDGMKRLEKLLARVLDIDPPRLSPGSVKLHTQHFGPLLKNSNMTSDEYKQAVLRA KEHIQAGDIFQIVLSQRFERRTFADPFEIYRALRVVNPSPYMTYLQARGCILVASSPEILTRVKNNRVVNRPLAGTVRRGKTPEEDEVLEEQLLKDPKQC AEHTMLVDLGRNDVGKVSKHGSVKVERLMNVERYSHVMHISSTVTGELHDHLTCWDALRAALPVGTVSGAPKVKAMELIDQMEVSRRGPYSGGLGGVSFT GDMDIALALRTMVFPTGTQYNTMYSYKDAQLRREWIAYLQAGAGIVADSVPDDEHRECQNKAAGLARAIDLAESTFVNKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05730		JDL1, WEI2, TRP...	WEAK ETHYLENE INSENSITIVE 2, T...		Potri.010G190600 [exp]	0	1
AT1G09390			GDSL-like Lipase/Acylhydrolase...		Potri.005G006500 [exp]	1.00	0.8951
AT3G08900		RGP3	reversibly glycosylated polype...		Potri.015G099400 [exp]	9.79	0.7872
AT1G72190			D-isomer specific 2-hydroxyaci...		Potri.013G104200 [exp]	11.66	0.8198
AT3G20820			Leucine-rich repeat (LRR) fami...		Potri.003G207000 [exp]	13.41	0.8236	Pt-PGI.2
AT1G76160		SKS5	SKU5 similar 5 (.1)		Potri.002G013700 [exp]	14.42	0.7822
AT3G08030			Protein of unknown function, D...		Potri.001G263900 [exp]	14.69	0.8032
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.004G131500 [exp]	16.58	0.7876	I.2
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Potri.008G120000 [exp]	16.79	0.8470	XYL1.2
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Potri.017G099100 [exp]	19.20	0.7895
AT3G08030			Protein of unknown function, D...		Potri.009G058800 [exp]	20.61	0.7818

Compare expression of checked genes

Potri.010G190600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.