Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45248 48 / 6e-07 Nucleolar histone methyltransferase-related protein (.1.2.3.4.5) AT1G04050 49 / 1e-06 SDG13, SUVR1 SET DOMAIN PROTEIN 13, homolog of SU(var)3-9 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G138600 [exp] 42 / 0.0003 AT3G04380 427 / 2e-144 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040211 [exp] 71 / 5e-14 AT2G40020 57 / 1e-09 Nucleolar histone methyltransferase-related protein (.1.2.3) Lus10028278 [exp] 69 / 3e-13 AT2G38120 801 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Lus10024946 [exp] 46 / 2e-05 AT5G43990 488 / 7e-163 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10022879 [exp] 46 / 2e-05 AT5G43990 455 / 2e-149 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10008199 [exp] 42 / 6e-05 AT5G43990 53 / 4e-09 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [poplar] [flax] UBA PF10440 [poplar] [flax] WIYLD Ubiquitin-binding WIYLD domain
Representative CDS sequence Show only first row Show all	>Potri.010G190800.1 pacid=42798210 polypeptide=Potri.010G190800.1.p locus=Potri.010G190800 ID=Potri.010G190800.1.v4.1 annot-version=v4.1 ATGCCTCCAGCAAGAAGAGATCGAAGGGTGGGTCTGAAACGCATCGATGCTGCTCTTGACGCTGTACGTCCTATGGGATTCCCGGAACCCTTGGTTCGCA GAACTGTCAGAAATCTCCTAAAGGAATATGGCGGGGATGAAGGTTGGGCTTTCATTGAGGAGTGCTGCTATAAGCTTTTGATTGACACGCTTCTCGATGA GGTAGAGAAATCAGAGAGGGAAAACTGCGAACCAGGATTGTTGACAGGCAATGACAAGCTCAAGCATTTGATTGAGAATGGACCGGCAGAGGATGACACT GTGAAAGATGAACCTAAAGTACAAGTTCACTCACCTAACGGTAATTCCAAGCAAGTTCATTCTCCAAACATTCACTCCCCGGCATCAATGGATATCATTC TATGTCCTTCAGTGAGTGATGCACCTGATGAGAAGCTTGGAGTGAAAGACTTTTCCCAACAAATTCACTCCGCACAGGCTTCCTCCTCACACTTCAACTC CTCACATGTAACTGACATTGTTCCACGCTCTTTGAAGGATGTTTCATCTCTAGTCAAGCTTGAAATGCAGTCCTGCTCTCCACAGATATCCTCCACGGGA GTCCAATCTCCACATTTGTTCTCCCCTTCGCCAGTGGATTCTCTCCCTCCTCAGAGGCGTAAACCTTGTTATGGATGGCTTAGCAGTGATGACGAGGATG AGCCAGATCTTTTACATCTAACACCTGCTACTTAA
AA sequence Show only first row Show all	>Potri.010G190800.1 pacid=42798210 polypeptide=Potri.010G190800.1.p locus=Potri.010G190800 ID=Potri.010G190800.1.v4.1 annot-version=v4.1 MPPARRDRRVGLKRIDAALDAVRPMGFPEPLVRRTVRNLLKEYGGDEGWAFIEECCYKLLIDTLLDEVEKSERENCEPGLLTGNDKLKHLIENGPAEDDT VKDEPKVQVHSPNGNSKQVHSPNIHSPASMDIILCPSVSDAPDEKLGVKDFSQQIHSAQASSSHFNSSHVTDIVPRSLKDVSSLVKLEMQSCSPQISSTG VQSPHLFSPSPVDSLPPQRRKPCYGWLSSDDEDEPDLLHLTPAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40020			Nucleolar histone methyltransf...		Potri.010G190800 [exp]	0	1
AT5G58490			NAD(P)-binding Rossmann-fold s...		Potri.009G076300 [exp]	5.74	0.7580	Pt-CCR.7
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Potri.005G039800 [exp]	9.74	0.7702
AT5G14530			Transducin/WD40 repeat-like su...		Potri.017G071900 [exp]	13.03	0.6935
AT1G78815		LSH7	LIGHT SENSITIVE HYPOCOTYLS 7, ...		Potri.001G390900 [exp]	13.85	0.7257
AT2G12400			unknown protein		Potri.018G120200 [exp]	16.55	0.7621
AT5G42000			ORMDL family protein (.1.2)		Potri.003G144600 [exp]	17.20	0.7335
AT1G09575			Protein of unknown function (D...		Potri.019G133400 [exp]	22.71	0.7551
AT4G35300		TMT2	tonoplast monosaccharide trans...		Potri.005G098900 [exp]	25.41	0.7107
					Potri.019G087800 [exp]	26.45	0.7212
AT1G77710			unknown protein		Potri.005G173800 [exp]	29.46	0.7415

Compare expression of checked genes

Potri.010G190800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.