Plant FIBer expression Database

Potri.010G190900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G62300 42 / 0.0004 ATDUF7 DOMAIN OF UNKNOWN FUNCTION 724 7 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05266 DUF724 Protein of unknown function (DUF724)
Representative CDS sequence
>Potri.010G190900.2 pacid=42797067 polypeptide=Potri.010G190900.2.p locus=Potri.010G190900 ID=Potri.010G190900.2.v4.1 annot-version=v4.1
ATGGCTTCCTCCTTTCAGTTCGGTCATGTATCAGAATCCGAAACCCAGTTCAATTCAGTGCAGCCATTGTCATTCACATTCTCATCGATTAATAATGGCA
ACACTATGGCACGTCTCGCCAAGGCAAGAAAAGCTGCACGTCCCTCTTCCTCTGCTTTGAATTCAGTCGACCCCATTACCTTTAAAAGCACCAGTGAAAG
TCCCTTTGCATTCGGTCAAGTTTCAAGCTTTTCAGCAGCTAATCCATTTACGTTCATTAGACATGAGGTTGACAAAGTATCCGACCATGATGCAGAAAAA
CCGATTGAAGCTGCAAGTAAGCTGCAGCATGAAAAAACTGAACCAGGGATTGGAGAGAAAGAAAACAATAGTACCAAAGAAATGGGTGTTTTGGCTCCAT
CCGATATCAAACAGGATAAGGTAGCAAGACAAGCAAACCAAGATTCAATGTCCAATAGGACAAATACTGCATTGGTGGTGATTTCAAGGATTTTGAAAGG
TATACCTCAAAGCCCTCACTTTTATCAGCTCATAAATCTCTCTGGACATACTAGAAAGGTTTTGATATCTTCATGGGATCGGATTTTCGAAGAAACTGTG
GAGCAAATGCACTCTCTACAGGTAAATGATTTCTGGGTCAGGGCTAGAGAATTGTGGAAAACCATGGGGGAGTTGCAAAGCATGGGGTATAACGTGATTC
CTCTGAGGAGAAGATTAGTGGAGTTAACTGATGTAATGATAGAGCTGAAGCTGACTAAGGTGGGAATGAAAGGGTTAATGATTAAAGCTGAGAACCATAG
AATGGAGAAAAGTAGGCTTGAGTTTGTGATTTTGCGTTTGCAAGAAATGATCATGCAAGAGCATTATGGTATGCTTGGAGCACTAGCTCAGATGGTTGAA
ATGGAGAAAGAGGTACCCAAATTTGACGGTGTCTTTGCTAAATTGGCAATGGAGCCTCTCTAG
AA sequence
>Potri.010G190900.2 pacid=42797067 polypeptide=Potri.010G190900.2.p locus=Potri.010G190900 ID=Potri.010G190900.2.v4.1 annot-version=v4.1
MASSFQFGHVSESETQFNSVQPLSFTFSSINNGNTMARLAKARKAARPSSSALNSVDPITFKSTSESPFAFGQVSSFSAANPFTFIRHEVDKVSDHDAEK
PIEAASKLQHEKTEPGIGEKENNSTKEMGVLAPSDIKQDKVARQANQDSMSNRTNTALVVISRILKGIPQSPHFYQLINLSGHTRKVLISSWDRIFEETV
EQMHSLQVNDFWVRARELWKTMGELQSMGYNVIPLRRRLVELTDVMIELKLTKVGMKGLMIKAENHRMEKSRLEFVILRLQEMIMQEHYGMLGALAQMVE
MEKEVPKFDGVFAKLAMEPL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.010G190900
[exp]
0 1
AT2G44930 Plant protein of unknown funct... Potri.017G019400
[exp]
2.82 0.8898
AT4G15140 unknown protein Potri.011G108700
[exp]
3.46 0.8931
AT4G14380 unknown protein Potri.008G167200
[exp]
4.24 0.9198
AT5G18290 SIP1B, SIP1;2 SMALL AND BASIC INTRINSIC PROT... Potri.014G154400
[exp]
5.19 0.8588
AT2G36985 DVL16, ROT4 ROTUNDIFOLIA4, DEVIL 16, DVL f... Potri.006G125600
[exp]
5.74 0.9098 Pt-ROT4.1
Potri.001G049700
[exp]
6.48 0.8926
AT4G10265 Wound-responsive family protei... Potri.019G117800
[exp]
7.28 0.8281
AT4G13440 Calcium-binding EF-hand family... Potri.019G029100
[exp]
10.39 0.8962
Potri.002G076300
[exp]
11.22 0.8386
AT3G47620 TCP AtTCP14, TCP14 "TEOSINTE BRANCHED, cycloidea ... Potri.011G055500
[exp]
11.66 0.8495

Potri.010G190900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.