Plant FIBer expression Database

Pt-SYP31.1 (Potri.010G191100) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-SYP31.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G05760 395 / 7e-138 ATSYP31, ATSED5, SYP31 T-SNARE SED 5, syntaxin of plants 31 (.1)
AT3G24350 270 / 2e-88 ATSYP32, SYP32 syntaxin of plants 32 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G157000
[exp]
259 / 2e-84 AT3G24350 294 / 3e-98 syntaxin of plants 32 (.1.2)
Potri.018G072400
[exp]
237 / 8e-76 AT3G24350 332 / 3e-113 syntaxin of plants 32 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040213
[exp]
482 / 3e-172 AT5G05760 418 / 4e-147 T-SNARE SED 5, syntaxin of plants 31 (.1)
Lus10028277
[exp]
481 / 1e-171 AT5G05760 417 / 7e-147 T-SNARE SED 5, syntaxin of plants 31 (.1)
Lus10033080
[exp]
277 / 3e-91 AT3G24350 432 / 1e-152 syntaxin of plants 32 (.1.2)
Lus10017741
[exp]
268 / 4e-88 AT3G24350 410 / 2e-144 syntaxin of plants 32 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05739 SNARE SNARE domain
PF11416 Syntaxin-5_N Syntaxin-5 N-terminal, Sly1p-binding domain
Representative CDS sequence
>Potri.010G191100.1 pacid=42798784 polypeptide=Potri.010G191100.1.p locus=Potri.010G191100 ID=Potri.010G191100.1.v4.1 annot-version=v4.1
ATGACCTCCTCCACCACAACCACCACAAAATACCGAGATCGGACGGCGGAGTTTCATTCAATAACCCAAACCCTGAAAAAAATCGGGGGAATCGCACCTG
TTCATCAAAACAAATCTTATCAAGCAAATAATTCCTCTCCTTCAAAACCACTGCTATCTTATACTACCAGATCCGAATTCAACAAAAAAGCTTCCTTAAT
TGGGTCAGGCGTCCACGAAACCTCACAAAAGATCTCCAGGCTCGCCCAATTGGCAAAACGGTCCTCAATGTTTAATGATCCAACCGTGGAGATACAAGAA
CTAACAGTGCTGATAAAGAATGATATAACCGCGTTAAATGCAGCCTTAACGGATCTGCAAACGATTCAAAATATGGAAATAGCTGATGGGAATTACTCAG
AAGATAGATTTGTTCATTCAACAACTGTTTGTGATGATTTGAAGAGTAAACTTATGGGTGCTACAAAACGGCTTCAAGATGTCTTAACTACTAGAACTGA
GAATATTAAGGCTCAAGAGAATAGAAAACAGATATTTTCGACCAATGTTTCGAGAGAGAATCCGTTTCTGCGTCAAGCGAAGCCGATGACTGAGCCACCT
CCTTGGTCAAATCCATCTAATACATTTGCCAATTCACAGCCGTCTGGATTGCCACCAAATGATGTTCAAGTTGGGAACCAATTAAGACGAAGGCCAGCTG
TGGACAACACTCCTTCCCAGCACATGGAAATGTCCATGTTGCAGCAGGTAAATCCAAGACAGGAGAACTATACTGAAAGCCGGGCAGTTGCCCTTCACAA
TGTGGAATCAACAATTTCAGAACTTGGTGGGATCTTTACACATTTGGCTACCATGGTTGTAGAGCAAGGGCAGTTGGCTATCAGGATTGATGATAACATG
GACGAGTCAGTGAATAACGTTGAGAATGCTCGTGGCTCTTTATTGAGGCATTTGAACCAAATATCATCAAATAGGTGGCTTATGATGAAGATCTTTGCTG
TTATAATATTTTTTCTCATTGTATTCATCTTGTTTGTGGCTTGA
AA sequence
>Potri.010G191100.1 pacid=42798784 polypeptide=Potri.010G191100.1.p locus=Potri.010G191100 ID=Potri.010G191100.1.v4.1 annot-version=v4.1
MTSSTTTTTKYRDRTAEFHSITQTLKKIGGIAPVHQNKSYQANNSSPSKPLLSYTTRSEFNKKASLIGSGVHETSQKISRLAQLAKRSSMFNDPTVEIQE
LTVLIKNDITALNAALTDLQTIQNMEIADGNYSEDRFVHSTTVCDDLKSKLMGATKRLQDVLTTRTENIKAQENRKQIFSTNVSRENPFLRQAKPMTEPP
PWSNPSNTFANSQPSGLPPNDVQVGNQLRRRPAVDNTPSQHMEMSMLQQVNPRQENYTESRAVALHNVESTISELGGIFTHLATMVVEQGQLAIRIDDNM
DESVNNVENARGSLLRHLNQISSNRWLMMKIFAVIIFFLIVFILFVA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G05760 ATSYP31, ATSED5... T-SNARE SED 5, syntaxin of pla... Potri.010G191100
[exp]
0 1 Pt-SYP31.1
AT5G57460 unknown protein Potri.006G168200
[exp]
2.82 0.8667
AT5G07960 unknown protein Potri.015G056300
[exp]
3.87 0.8715
AT3G05940 Protein of unknown function (D... Potri.005G000600
[exp]
5.65 0.8076
AT3G60540 Preprotein translocase Sec, Se... Potri.002G143100
[exp]
7.74 0.8485
AT2G01930 BBR_BPC BPC1, BBR/BPC1,... basic pentacysteine1 (.1.2) Potri.008G140200
[exp]
8.48 0.8243
AT2G18030 Peptide methionine sulfoxide r... Potri.007G012900
[exp]
11.74 0.8423 PtrcMsrA5
AT1G08770 PRA1.E prenylated RAB acceptor 1.E (.... Potri.005G054700
[exp]
12.52 0.7143
AT1G11890 ATSEC22, SEC22 SECRETION 22, Synaptobrevin fa... Potri.001G165600
[exp]
14.17 0.8558 Pt-SEC22.1
AT1G47830 SNARE-like superfamily protein... Potri.005G238701
[exp]
16.12 0.8447
AT1G51980 Insulinase (Peptidase family M... Potri.008G193200
[exp]
17.54 0.7829

Potri.010G191100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.