Plant FIBer expression Database

Potri.010G191300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G40000 506 / 7e-178 ATHSPRO2 ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2, ortholog of sugar beet HS1 PRO-1 2 (.1)
AT3G55840 452 / 6e-157 Hs1pro-1 protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G066000
[exp]
854 / 0 AT2G40000 532 / 0.0 ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2, ortholog of sugar beet HS1 PRO-1 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028275
[exp]
671 / 0 AT2G40000 526 / 0.0 ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2, ortholog of sugar beet HS1 PRO-1 2 (.1)
Lus10040215
[exp]
663 / 0 AT2G40000 527 / 0.0 ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2, ortholog of sugar beet HS1 PRO-1 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0380 IDO-like PF07014 Hs1pro-1_C Hs1pro-1 protein C-terminus
CL0380 PF07231 Hs1pro-1_N Hs1pro-1 N-terminus
Representative CDS sequence
>Potri.010G191300.1 pacid=42797263 polypeptide=Potri.010G191300.1.p locus=Potri.010G191300 ID=Potri.010G191300.1.v4.1 annot-version=v4.1
ATGGTTGATTTAGATTGGAAAGCAAAGATGGTATCCTCTGATCTCCCAAACAAATCCCCAAAACTCTCCAACAAACTCCAAATCTCAATCCCAGCCATTC
CGTTTCGTGGCGTCTCGAATATCACTCCGACTCCTGCTTCCGACTCCTCTTGTTCAGCTTACGAGCACTGCTTCCGCCTCGCAGAGCTACATCAGATATG
GAACCGCAAAGAATTTCCTAATTGGAAAACAGAGTCTATTCTAAAGCCAGCCTTGCAAGCTCTAGAAATCACTTTCCGGTTCATTTCAACGGTTTTATCA
GATGCAAGACCATACGCGAATCGGAGAGAATTGACTCGGAGGATCGAGTCACTCACCACCTCTCAGATTGAGTTAATCGCGATCATCATCGAAGACGAGG
CAGAAGGTAGCACAACGCGTGGTACGGCTCCGATCGTTGACTTGAGCTCATCGAACAGTGTTCTGGCTAGAGATGGAAGCTATGCGGAGGTCTGGAAGGT
TCCAGGTGAAACTACAGTGGTCAGTAAAACCAGCGAGGCAAGTCTGCTGCCTAGGCTCGCAACGTGGCAGACATCAGAAGATGTAGCTCAGAAAATCTTG
TACTCTATCGAGTGCGAGATGAGACGGTGCCCGTACACACTAGGTCTCGGCGAGCCAAACCTAACCGGCAAGCCAAACCTTGAATACGACGCTGTTTGCA
GGCCGAACGAAATCCACGCCCTCAAAAAGAGTCCTTACGATCACACAAACAACCAGGAAAACCAATCATTGTATACCACGCATCAAATCTTAGAGTCATG
GATCCACGTGGCAAAACAAATAATCCAGCGCGTAACTGAAAGAATCGAAAGCAAAGAATTTTCAAGAGCAGCAAACGATTGTTATCTAGTCGAGAGAATC
TGGAAACTTCTAGCAGAAATTGAAGACTTGCATCTACTGATGGATCCAGATGATTTCCTGAGGCTAAAAAATCAGTTACAAATGCGATCGCTAGACGAAA
CGGCTCCGTTTTGTTTCAGATCGAGAGAATTGGTGGAGATAACCAAATCGTGCAAGGAATTGAAGCATAAGGTACCGGAGATTTTAGGCGTTGAAGTGGA
CCCAAAAGGTGGGCCCAGGATACAAGAAGCGGCCATGAGGTTGTACAGTGAAAAAAGGGAGTTTGAGAAGGTTTACTTGCTTCAGGCTTTACAGGCAATT
GAGGGTGCTTTGAAGCGGTTCTTTTATGCGTATAAACAGGTGTTGGTTGTTGTTATGGGGAGTTTGGAGGCCAAAGGGAATGGCGTTTTGGTGAGTTCCG
AGAGTTGTGACTCGTTGACTCAGTTGTTCCTTGAACCCACTTATTTTCCGAGTTTGGATGCTGCGAAGACTTTTTTAGGAGAGTCGTGGAGTCATCGACA
ACATACTGCGATGGAGAGACGGAGTCGGAGGAAGCAGTGA
AA sequence
>Potri.010G191300.1 pacid=42797263 polypeptide=Potri.010G191300.1.p locus=Potri.010G191300 ID=Potri.010G191300.1.v4.1 annot-version=v4.1
MVDLDWKAKMVSSDLPNKSPKLSNKLQISIPAIPFRGVSNITPTPASDSSCSAYEHCFRLAELHQIWNRKEFPNWKTESILKPALQALEITFRFISTVLS
DARPYANRRELTRRIESLTTSQIELIAIIIEDEAEGSTTRGTAPIVDLSSSNSVLARDGSYAEVWKVPGETTVVSKTSEASLLPRLATWQTSEDVAQKIL
YSIECEMRRCPYTLGLGEPNLTGKPNLEYDAVCRPNEIHALKKSPYDHTNNQENQSLYTTHQILESWIHVAKQIIQRVTERIESKEFSRAANDCYLVERI
WKLLAEIEDLHLLMDPDDFLRLKNQLQMRSLDETAPFCFRSRELVEITKSCKELKHKVPEILGVEVDPKGGPRIQEAAMRLYSEKREFEKVYLLQALQAI
EGALKRFFYAYKQVLVVVMGSLEAKGNGVLVSSESCDSLTQLFLEPTYFPSLDAAKTFLGESWSHRQHTAMERRSRRKQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G40000 ATHSPRO2 ARABIDOPSIS ORTHOLOG OF SUGAR ... Potri.010G191300
[exp]
0 1
AT2G19710 Regulator of Vps4 activity in ... Potri.006G149800
[exp]
2.23 0.9153
AT5G51190 AP2_ERF Integrase-type DNA-binding sup... Potri.001G079800
[exp]
2.44 0.9270 ERF6
AT3G16720 ATL2 TOXICOS EN LEVADURA 2 (.1) Potri.008G219200
[exp]
2.44 0.9263 ATL2.3
AT5G43470 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PAR... Potri.003G149800
[exp]
3.74 0.9075
AT1G01490 Heavy metal transport/detoxifi... Potri.017G147000
[exp]
5.74 0.9221
AT1G01720 NAC ATAF1, ANAC002 Arabidopsis NAC domain contain... Potri.005G069500
[exp]
6.00 0.8907
AT3G05200 ATL6 RING/U-box superfamily protein... Potri.005G036800
[exp]
6.63 0.9195
AT1G27730 C2H2ZnF ZAT10, STZ salt tolerance zinc finger (.1... Potri.001G295500
[exp]
6.92 0.9037
AT2G40000 ATHSPRO2 ARABIDOPSIS ORTHOLOG OF SUGAR ... Potri.008G066000
[exp]
7.93 0.8761
Potri.018G078801
[exp]
8.94 0.9002

Potri.010G191300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.