Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06060 448 / 2e-159 TSC10A TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G19200 428 / 2e-151 TSC10B TSC10B, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G47350 86 / 6e-19 ATHSD2 hydroxysteroid dehydrogenase 2 (.1.2) AT5G50690 86 / 7e-19 ATHSD7 hydroxysteroid dehydrogenase 7 (.1) AT5G50590 86 / 7e-19 ATHSD4 hydroxysteroid dehydrogenase 4 (.1) AT2G29360 85 / 7e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29370 85 / 7e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G47360 84 / 4e-18 ATHSD3 hydroxysteroid dehydrogenase 3 (.1) AT5G50600 83 / 9e-18 ATHSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50700 83 / 9e-18 HSD1 hydroxysteroid dehydrogenase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G102000 [exp] 92 / 4e-21 AT5G50700 279 / 7e-93 hydroxysteroid dehydrogenase 1 (.1) Potri.010G056100 [exp] 86 / 1e-18 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G048800 [exp] 84 / 2e-18 AT5G50690 284 / 2e-95 hydroxysteroid dehydrogenase 7 (.1) Potri.008G178700 [exp] 84 / 3e-18 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G100000 [exp] 82 / 9e-18 AT5G50690 298 / 8e-101 hydroxysteroid dehydrogenase 7 (.1) Potri.012G101900 [exp] 81 / 4e-17 AT5G50690 287 / 9e-97 hydroxysteroid dehydrogenase 7 (.1) Potri.016G048900 [exp] 78 / 4e-16 AT5G50690 275 / 2e-91 hydroxysteroid dehydrogenase 7 (.1) Potri.015G099900 [exp] 75 / 4e-15 AT5G50700 285 / 5e-95 hydroxysteroid dehydrogenase 1 (.1) Potri.010G142600 [exp] 74 / 6e-15 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024146 [exp] 488 / 9e-175 AT3G06060 450 / 6e-160 TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010509 [exp] 309 / 3e-106 AT3G06060 278 / 3e-94 TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039501 [exp] 300 / 1e-102 AT3G06060 260 / 2e-87 TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10034045 [exp] 195 / 1e-62 AT3G06060 176 / 2e-55 TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010510 [exp] 174 / 7e-54 AT5G19200 192 / 2e-61 TSC10B, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010511 [exp] 128 / 5e-37 AT3G06060 105 / 4e-29 TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10015821 [exp] 85 / 5e-18 AT1G24360 427 / 5e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10036980 [exp] 80 / 9e-17 AT1G24360 437 / 3e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026851 [exp] 79 / 2e-16 AT3G03330 439 / 7e-156 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040731 [exp] 78 / 2e-16 AT5G06060 308 / 5e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08659 [poplar] [flax] KR KR domain
Representative CDS sequence Show only first row Show all	>Potri.010G191800.2 pacid=42800058 polypeptide=Potri.010G191800.2.p locus=Potri.010G191800 ID=Potri.010G191800.2.v4.1 annot-version=v4.1 ATGGCGGACTCAAACCTCTTCTGCATCTCCCTCGTCCTCCTCCCTCTCATCCTCCTCTTTCTTCTATTCCTAATCACCAGACCCCGACCCATCCAAATCC CAATAAAGAAACGCCATATCTTCATCACCGGCGGATCCAGCGGCATCGGTCTAGCCCTGGCACACCGGGCCGCATCAGAGGGAGCCCGTGTCTCAATTTT ATCCAGGTCCATAGATAAGCTAGAAGAAGCTAAGAACGCAATCAGACAGTCCACCGGCATCGACGTGGCAATTTTTGCTGCTGATGTGAGAGATTTTGAA GCAGTACAGAGAGCCGTTGATGAAGCTGGCCCCATAGATGTCTTGGTTGTGAATCAAGGGGTTTTTGTGGCTCAGGAATTGGAGGAGCAGAAATTGGAAG AAGTCAGGTTCATTATAGATGTTAATTTGATGGGGAGTTTCAATATGATTAAAGCCGCCTTACCTGGAATGAAGAGAAGCAGGAAGGATCGGGGACCTGG TTCTATTGCTCTCATGTCTTCCCAGGCTGGCCAGGTAGGTATTTATGGATACACAGCTTACTCGGCTAGTAAATTTGGTCTCCGGGGTTTAGCAGAAGCA TTGCAACAGGAGGTTATTGGGGACAATATCCATGTCTCTCTAGTATTCCCTCCGGATACCGAAACTCCTGGTCTGACTGAAGAAAACAAAAGAAAACCAC AACTCACAAGTATCATAGCAGCATCCTCTGGTGCAATGAAAGCCGATGAAGTTGCAAAGAAAGCTTTAGATGGCATTAAATCTGGTAGTTTTACAATCCC GTGCAACTCCGAGGGAATCTTATTGGCCATAGCAACTGCCGGTTTATCTCCTCAGAGATCATACTTGATGGCATTTGTTGAAGTGGTTGCTGCTGGTATA GTACGTATTGCAGCTCTGTGTTTCCAATGGAATTGGTATGGAAGCATAGAGAAGTGGCACATGCAAAAAAACCGAACTTAG
AA sequence Show only first row Show all	>Potri.010G191800.2 pacid=42800058 polypeptide=Potri.010G191800.2.p locus=Potri.010G191800 ID=Potri.010G191800.2.v4.1 annot-version=v4.1 MADSNLFCISLVLLPLILLFLLFLITRPRPIQIPIKKRHIFITGGSSGIGLALAHRAASEGARVSILSRSIDKLEEAKNAIRQSTGIDVAIFAADVRDFE AVQRAVDEAGPIDVLVVNQGVFVAQELEEQKLEEVRFIIDVNLMGSFNMIKAALPGMKRSRKDRGPGSIALMSSQAGQVGIYGYTAYSASKFGLRGLAEA LQQEVIGDNIHVSLVFPPDTETPGLTEENKRKPQLTSIIAASSGAMKADEVAKKALDGIKSGSFTIPCNSEGILLAIATAGLSPQRSYLMAFVEVVAAGI VRIAALCFQWNWYGSIEKWHMQKNRT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Potri.010G191800 [exp]	0	1
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Potri.014G194700 [exp]	1.41	0.8973
					Potri.009G001301 [exp]	10.67	0.8221
AT1G17130			Family of unknown function (DU...		Potri.011G096100 [exp]	11.04	0.8352
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Potri.002G207865 [exp]	11.61	0.8069
AT3G62840			Small nuclear ribonucleoprotei...		Potri.002G204300 [exp]	18.70	0.7492
AT1G16180			Serinc-domain containing serin...		Potri.001G038100 [exp]	20.00	0.8096
AT5G10810		ATER	ARABIDOPSIS THALIANA ENHANCER ...		Potri.018G017300 [exp]	21.63	0.8128
AT1G16560			Per1-like family protein (.1.2...		Potri.015G136600 [exp]	23.87	0.8035
AT3G55460		SCL30, At-SCL30	SC35-like splicing factor 30 (...		Potri.008G056600 [exp]	24.53	0.8119	Pt-SCL30.2
AT5G55530			Calcium-dependent lipid-bindin...		Potri.011G088400 [exp]	33.19	0.7590

Compare expression of checked genes

Potri.010G191800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.