Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-TIF3.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39990 432 / 5e-154 AteIF3f, EIF2 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1) AT3G11270 111 / 1e-28 MEE34 maternal effect embryo arrest 34, Mov34/MPN/PAD-1 family protein (.1.2) AT5G05780 105 / 2e-26 RPN8A, AE3, ATHMOV34 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) AT5G56280 77 / 7e-16 CSN6A COP9 signalosome subunit 6A (.1) AT4G26430 70 / 2e-13 CSN6B COP9 signalosome subunit 6B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G065500 [exp] 372 / 4e-131 AT2G39990 306 / 3e-105 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1) Potri.010G192200 [exp] 112 / 7e-29 AT5G05780 560 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Potri.008G065300 [exp] 110 / 3e-28 AT5G05780 568 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Potri.008G065200 [exp] 103 / 8e-26 AT5G05780 568 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Potri.011G169900 [exp] 67 / 1e-12 AT5G56280 511 / 0.0 COP9 signalosome subunit 6A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028272 [exp] 488 / 2e-176 AT2G39990 431 / 9e-154 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1) Lus10040218 [exp] 486 / 1e-175 AT2G39990 423 / 2e-150 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1) Lus10035522 [exp] 106 / 1e-26 AT5G05780 550 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Lus10027775 [exp] 104 / 8e-26 AT5G05780 555 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Lus10027082 [exp] 66 / 7e-12 AT5G56280 527 / 0.0 COP9 signalosome subunit 6A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0366 [poplar] [flax] JAB PF01398 [poplar] [flax] JAB JAB1/Mov34/MPN/PAD-1 ubiquitin protease CL0366 [poplar] [flax] PF13012 [poplar] [flax] MitMem_reg Maintenance of mitochondrial structure and function
Representative CDS sequence Show only first row Show all	>Potri.010G192000.2 pacid=42799706 polypeptide=Potri.010G192000.2.p locus=Potri.010G192000 ID=Potri.010G192000.2.v4.1 annot-version=v4.1 ATGGCGGCGATCGAGCAGCAAACAGTCCTCCAATTCGCACCATCATCTTCATCGACCCTCTCCGCGAAGGTTCACCCTCTTGTCATCTTCAACATCTGCG ATTGCTACGTTAGGCGGCCTGACCAAGCTGAGCGCGTCATTGGCACTCTCCTTGGCTCCGTCTTGCCCGATGGCACCGTTGATATCCGCAACTCTTATGC CGTCCCTCATAATGAATCCTCCGAACAGGTGGCTTTGGATATCGATTACCATCATAACTTGCTGCTGTCTCATCAAAAAGTGAATCCTAAGGAAGTTATT GTTGGATGGTATTCAACTGGGTTAGGAGTTACTGGCGGTAGTGCTTTGATTCATGATTTCTATTCCAGAGAAGTCCCGAACCCTATTCATCTGACGGTGG ATACAGGATTCAGTAATGGGGAGGGTACCATAAAGGCTTATGTTTCTGTGAATCTGTCTCTTGGAGACCGTCCGCTTGCGGCACAATTTCAAGAAGTTCC TCTTGATCTTCGAATGGTTGAAGCTGAGCGCATTGGATTTGATGTTTTGAAGACTACAATGGTTGACAAAATTCCAAGTGATTTGGAAGGGATGGAAATC TCTATGCAACGGCTACTAGCTCTAATTGATGATGTGTACAAATATGTTGATGATGTGGTGGAAGGGCACACTGCACCAGATAATAACATAGGACGTTTTA TATCAGACACGGTCGCCTCCCTTCCCAAACTTTCACCACCAGTGTTTGATAAGCTTGTAAATGACAATGTGCAGGACCATTTACTCTTGCTGTATCTGTC AAGCATCACTAGGACACAGCTCAGCTTAGCAGAGAAGTTGAATACAGCTGCTCAGATCCTCTGA
AA sequence Show only first row Show all	>Potri.010G192000.2 pacid=42799706 polypeptide=Potri.010G192000.2.p locus=Potri.010G192000 ID=Potri.010G192000.2.v4.1 annot-version=v4.1 MAAIEQQTVLQFAPSSSSTLSAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYAVPHNESSEQVALDIDYHHNLLLSHQKVNPKEVI VGWYSTGLGVTGGSALIHDFYSREVPNPIHLTVDTGFSNGEGTIKAYVSVNLSLGDRPLAAQFQEVPLDLRMVEAERIGFDVLKTTMVDKIPSDLEGMEI SMQRLLALIDDVYKYVDDVVEGHTAPDNNIGRFISDTVASLPKLSPPVFDKLVNDNVQDHLLLLYLSSITRTQLSLAEKLNTAAQIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39990		AteIF3f, EIF2	Arabidopsis thaliana eukaryoti...		Potri.010G192000 [exp]	0	1	Pt-TIF3.4
AT5G57490		VDAC4, ATVDAC4	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.006G169400 [exp]	2.00	0.8868
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Potri.017G100800 [exp]	3.16	0.9229
AT1G10840		TIF3H1	translation initiation factor ...		Potri.002G233500 [exp]	4.89	0.8510	TIF3.6
AT1G28395			unknown protein		Potri.011G057300 [exp]	9.38	0.8620
AT3G46560		TIM9, EMB2474	embryo defective 2474, Tim10/D...		Potri.012G039100 [exp]	9.64	0.8941	Pt-TIM9.1
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Potri.014G053300 [exp]	10.19	0.8988	RPS11.4
AT1G47278			unknown protein		Potri.009G029400 [exp]	12.48	0.8037
AT2G27530		PGY1	PIGGYBACK1, Ribosomal protein ...		Potri.007G035600 [exp]	12.84	0.8824
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Potri.004G176600 [exp]	12.96	0.8362
AT4G27090			Ribosomal protein L14 (.1)		Potri.005G227300 [exp]	15.49	0.8563

Compare expression of checked genes

Potri.010G192000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.