Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RPN8.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11270 560 / 0 MEE34 maternal effect embryo arrest 34, Mov34/MPN/PAD-1 family protein (.1.2) AT5G05780 560 / 0 RPN8A, AE3, ATHMOV34 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) AT2G39990 105 / 4e-26 AteIF3f, EIF2 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1) AT4G26430 97 / 7e-23 CSN6B COP9 signalosome subunit 6B (.1) AT5G56280 93 / 2e-21 CSN6A COP9 signalosome subunit 6A (.1) AT1G10840 47 / 7e-06 TIF3H1 translation initiation factor 3 subunit H1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G065300 [exp] 595 / 0 AT5G05780 568 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Potri.008G065200 [exp] 595 / 0 AT5G05780 568 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Potri.010G192000 [exp] 122 / 7e-33 AT2G39990 431 / 7e-154 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1) Potri.011G169900 [exp] 102 / 6e-25 AT5G56280 511 / 0.0 COP9 signalosome subunit 6A (.1) Potri.008G065500 [exp] 79 / 4e-17 AT2G39990 306 / 3e-105 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1) Potri.002G233500 [exp] 44 / 6e-05 AT1G10840 555 / 0.0 translation initiation factor 3 subunit H1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027775 [exp] 561 / 0 AT5G05780 555 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Lus10035522 [exp] 559 / 0 AT5G05780 550 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Lus10028272 [exp] 131 / 4e-36 AT2G39990 431 / 9e-154 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1) Lus10040218 [exp] 131 / 6e-36 AT2G39990 423 / 2e-150 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1) Lus10027082 [exp] 89 / 8e-20 AT5G56280 527 / 0.0 COP9 signalosome subunit 6A (.1) Lus10007054 [exp] 45 / 3e-05 AT1G10840 558 / 0.0 translation initiation factor 3 subunit H1 (.1.2) Lus10020427 [exp] 45 / 3e-05 AT1G10840 570 / 0.0 translation initiation factor 3 subunit H1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0366 [poplar] [flax] JAB PF01398 [poplar] [flax] JAB JAB1/Mov34/MPN/PAD-1 ubiquitin protease CL0366 [poplar] [flax] PF13012 [poplar] [flax] MitMem_reg Maintenance of mitochondrial structure and function
Representative CDS sequence Show only first row Show all	>Potri.010G192200.1 pacid=42799390 polypeptide=Potri.010G192200.1.p locus=Potri.010G192200 ID=Potri.010G192200.1.v4.1 annot-version=v4.1 ATGGATGTAATAAAAACGCAACAAATATCGGCGAGACCGATCGAGAAAGTGATAGTGCATCCTCTAGTTCTACTCAGCATCGTCGACAACTACAATAGAG TAGCTAAGGACACTCGCAAACGTGTTGTTGGGGTCTTGCTTGGTTCCAGTTTTAAGGGCACTGTTGATGTCACTAACAGCTACGCAGTGCCATTTGAAGA AGATGACAAGGACCCAGGCATCTGGTTTCTTGACCACAATTACCATGAATCAATGTTTTCCATGTTCAAAAGAATAAATGCCAAGGAGCATGTTGTGGGT TGGTACAGCACAGGGCCAAAACTGAGGGAAAATGACCTGGAGATTCACGGATTATTTAACGATTATGCTCCAAATCCTGTCTTGGTCATAATTGATGTCC AACTGGTAGAGTTGGGAATACCCACAAAAGCATACTATGCTGTCGAAGAGGTGAAAGAGAATGCTACCCAGAAAAGCCAGAAGGTGTTTGTGCATGTGCC ATCAGAAATTGCTGCCCATGAAGTCGAGGAAATTGGTGTAGAACACTTATTGAGGGATGTGAAGGACACAACAATTAGTACTCTTGCAACTGAGGTTACT GGGAAACTCACAGCTCTGAAAGGGTTGGATGCTCGGCTAAAAGAAATACGTGGTTATCTTGACCTCGTCATTGAAGGAAAGCTCCCATTAAACCATGAGA TTCTGTACCATCTACAGGATGTGTTCAACCTACTTCCTAACCTTAACGTGGCAGACTTGATTAAGGCTTTTGCAGTGAAAACAAATGATATGATGTTGGT TATTTATCTTTCATCTCTCGTCCGAAGTGTAGTCGCTCTCCACAACTTGATCAACAACAAGATGCTCAACAAAGAACATGAGAAAGCAGAAGACTCAAAG CTCGTTTCTGTACCTCCTGCTGTCGCAAGCTAG
AA sequence Show only first row Show all	>Potri.010G192200.1 pacid=42799390 polypeptide=Potri.010G192200.1.p locus=Potri.010G192200 ID=Potri.010G192200.1.v4.1 annot-version=v4.1 MDVIKTQQISARPIEKVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVTNSYAVPFEEDDKDPGIWFLDHNYHESMFSMFKRINAKEHVVG WYSTGPKLRENDLEIHGLFNDYAPNPVLVIIDVQLVELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVT GKLTALKGLDARLKEIRGYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVADLIKAFAVKTNDMMLVIYLSSLVRSVVALHNLINNKMLNKEHEKAEDSK LVSVPPAVAS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Potri.010G192200 [exp]	0	1	Pt-RPN8.1
AT1G16470		PAB1	proteasome subunit PAB1 (.1.2)		Potri.015G122400 [exp]	5.74	0.9025
AT1G64520		RPN12A	regulatory particle non-ATPase...		Potri.001G088200 [exp]	10.67	0.8895
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Potri.006G141300 [exp]	14.69	0.8343
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Potri.005G229000 [exp]	14.96	0.8775	APFI.2
AT1G27390		TOM20-2	translocase outer membrane 20-...		Potri.001G330200 [exp]	17.66	0.8824
AT1G51980			Insulinase (Peptidase family M...		Potri.001G191100 [exp]	20.00	0.8343
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Potri.014G069800 [exp]	27.27	0.8549	PBF1.2
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Potri.019G131900 [exp]	28.10	0.8744	Pt-RPL10.4
AT5G23540			Mov34/MPN/PAD-1 family protein...		Potri.002G127900 [exp]	29.29	0.8299
AT3G22110		PAC1	20S proteasome alpha subunit C...		Potri.016G015400 [exp]	29.49	0.8735

Compare expression of checked genes

Potri.010G192200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.