Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39980 708 / 0 HXXXD-type acyl-transferase family protein (.1) AT5G01210 617 / 0 HXXXD-type acyl-transferase family protein (.1) AT5G42830 296 / 9e-96 HXXXD-type acyl-transferase family protein (.1) AT5G07860 263 / 8e-83 HXXXD-type acyl-transferase family protein (.1) AT5G07850 263 / 1e-82 HXXXD-type acyl-transferase family protein (.1) AT5G67150 237 / 1e-72 HXXXD-type acyl-transferase family protein (.1) AT3G50270 216 / 1e-64 HXXXD-type acyl-transferase family protein (.1) AT3G50280 212 / 3e-63 HXXXD-type acyl-transferase family protein (.1) AT3G50300 207 / 2e-61 HXXXD-type acyl-transferase family protein (.1) AT5G23940 205 / 3e-60 PEL3, DCR, EMB3009 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G065000 [exp] 939 / 0 AT2G39980 705 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.016G112400 [exp] 655 / 0 AT5G01210 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.006G097500 [exp] 631 / 0 AT5G01210 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025550 [exp] 323 / 5e-106 AT5G42830 579 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025500 [exp] 315 / 7e-103 AT5G42830 576 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025600 [exp] 312 / 8e-102 AT5G42830 565 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.003G057100 [exp] 291 / 2e-93 AT3G50280 303 / 4e-99 HXXXD-type acyl-transferase family protein (.1) Potri.003G057200 [exp] 289 / 5e-93 AT5G67150 297 / 1e-96 HXXXD-type acyl-transferase family protein (.1) Potri.003G057001 [exp] 288 / 1e-92 AT5G67150 275 / 3e-88 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040222 [exp] 662 / 0 AT2G39980 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10028267 [exp] 656 / 0 AT2G39980 631 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10035519 [exp] 441 / 1e-152 AT5G01210 520 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10027779 [exp] 346 / 7e-117 AT5G01210 350 / 7e-119 HXXXD-type acyl-transferase family protein (.1) Lus10024809 [exp] 257 / 5e-80 AT5G42830 442 / 8e-153 HXXXD-type acyl-transferase family protein (.1) Lus10031148 [exp] 233 / 4e-71 AT5G67150 284 / 5e-91 HXXXD-type acyl-transferase family protein (.1) Lus10041591 [exp] 226 / 3e-68 AT5G67150 347 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10027500 [exp] 210 / 3e-62 AT5G23940 571 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10039256 [exp] 200 / 3e-58 AT5G23940 576 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10031725 [exp] 163 / 1e-45 AT3G50300 198 / 2e-59 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.010G192400.1 pacid=42799366 polypeptide=Potri.010G192400.1.p locus=Potri.010G192400 ID=Potri.010G192400.1.v4.1 annot-version=v4.1 ATGCCTTCTGCTACTTCTCTAACAATTGTCTCGAAATGCACCGTCTTCCCAGACCAAAAATCTACTCTACAAGATCTCAAGCTCTCCGTCTCTGACCTCC CTATGCTTTCTTGCCACTACATCCAAAAGGGTGGCCTTTTCACTAGCCCTCCAACACTCTCCATCGATTCCTTAATCTCCCACCTAAAACAATCTCTCTC TCAAACTCTCTCTCACTTCCCTCCTCTGGCAGGTCGCTTCAACACAGATTCCAATGGCCACATCTACATTACCTGCAACGATGCAGGCGTAGATTTCATC CATGCCACCGCAACCGATATTTCCATCCAAGATATTCTCTATCCACTTCATGTACCTGATTGCATCAGGGGCTTTTTTGCTTTCGAGAGCACTGTTAGCT ACCAAGGCCATTATAAACCAATCTTGGCTGTTCAGGTCACAGAATTAGCTGATGGGGTTTTCATTGGTTGTTCAATGAATCATTCTGTTACTGATGGTAC GTCATTTTGGAACTTCTTTAATACCTTCGCTGAAGTTTCGAGAGGAATCAAGAAAATATCAAGAAAGCCTGATTTCTCAAGAAACTCAATCTTGATTTCC GAAGCTGTACTTAAAGTTCCTCAAGGTGGCCCCCGAGTCACTTTTAATGAAAACGAGCCATTAAGTGAAAGGATTTTCAGTTTTAGCAGAGAAGCGATTT TGAAGCTGAAATCCGAAGTCAACAACAAGAAATGGAGTCAAAATTCAGATAACGCTAATGTTGATGTTGTTGAATTAATGGGAAAACAAAGCAATGATAC ACTGTTTCAGATTCACAACAGCGGTAAGATGACTACAATTCTTGAAAGCTGGTTCAAGAACGCAGTTTTCAAACCGCAAGAAACTGTGTCAAACCTTCAA ACGGGGGAGATTTCGTCGTTTCAATCACTGAGTGCCCTTCTATGGCGTGCGGTGACACGTGCAAGGAAGTTGAACCCGTCGAAAACGACCACGTTTAGAA TGGCTGTTAATTGCCGACACCGTTTGAACCCCAAACTCGATCCGTTGTATTTTGGGAACGCAATTCAAAGCATACCCACATACGCGTCAGCTGAGGACGT GTTGTCTAGGGATCTACGCTGGTGTGCGGAGCAGCTGAATAAAAATGTCGCTGCCCACAACGACGGAACGGTACGTCGTTTCGTTCAGGACTGGGAAAGT AATCCGAGGTGTTTCCCGTTAGGGAACTTGGACGGTGCATCAATGACCATGGGTAGCTCACCAAGATTCCCAATGTACGATAATGATTTTGGGTGGGGTC GACCTTTGGCAGTGAGGAGTGGTAAGGCCAACAAGTTTGATGGTAAAATCTCTGCTTTTCCTGGGAGAGAAGGTAATGGAACCGTTGATCTTGAGGTTGT GTTGGCTCCTGAAACAATGGCTGGGATTGAGTCTGATCACGAGTTCATGCAGTTTGTGTCTAGTTAG
AA sequence Show only first row Show all	>Potri.010G192400.1 pacid=42799366 polypeptide=Potri.010G192400.1.p locus=Potri.010G192400 ID=Potri.010G192400.1.v4.1 annot-version=v4.1 MPSATSLTIVSKCTVFPDQKSTLQDLKLSVSDLPMLSCHYIQKGGLFTSPPTLSIDSLISHLKQSLSQTLSHFPPLAGRFNTDSNGHIYITCNDAGVDFI HATATDISIQDILYPLHVPDCIRGFFAFESTVSYQGHYKPILAVQVTELADGVFIGCSMNHSVTDGTSFWNFFNTFAEVSRGIKKISRKPDFSRNSILIS EAVLKVPQGGPRVTFNENEPLSERIFSFSREAILKLKSEVNNKKWSQNSDNANVDVVELMGKQSNDTLFQIHNSGKMTTILESWFKNAVFKPQETVSNLQ TGEISSFQSLSALLWRAVTRARKLNPSKTTTFRMAVNCRHRLNPKLDPLYFGNAIQSIPTYASAEDVLSRDLRWCAEQLNKNVAAHNDGTVRRFVQDWES NPRCFPLGNLDGASMTMGSSPRFPMYDNDFGWGRPLAVRSGKANKFDGKISAFPGREGNGTVDLEVVLAPETMAGIESDHEFMQFVSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39980			HXXXD-type acyl-transferase fa...		Potri.010G192400 [exp]	0	1
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039200 [exp]	2.23	0.7654
					Potri.008G164250 [exp]	7.74	0.7440
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Potri.002G086000 [exp]	8.36	0.6793
AT4G34770			SAUR-like auxin-responsive pro...		Potri.004G165800 [exp]	9.48	0.6821
AT3G23150		ETR2	ethylene response 2, Signal tr...		Potri.010G074300 [exp]	13.49	0.6402	Pt-ETR2.3
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Potri.002G201500 [exp]	15.96	0.6290	ERS1.1,ETR1
AT1G03940			HXXXD-type acyl-transferase fa...		Potri.019G118000 [exp]	16.43	0.6979
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Potri.002G161000 [exp]	16.97	0.6771	Pt-UBC4.1
AT2G35215			unknown protein		Potri.003G092100 [exp]	17.08	0.7014
AT1G03940			HXXXD-type acyl-transferase fa...		Potri.019G118101 [exp]	22.18	0.6412

Compare expression of checked genes

Potri.010G192400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.