Plant FIBer expression Database

Potri.010G192501 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.010G192501.1 pacid=42797773 polypeptide=Potri.010G192501.1.p locus=Potri.010G192501 ID=Potri.010G192501.1.v4.1 annot-version=v4.1
ATGCTTGTTGAAAGGGGAAGGGAGAGGGAATTCAGTCATTCAATTTTGTGTCGAAGTTTGAACTTGACATGTGCTCAGGTGAGATTTCACTTACACTTGA
GTGATCAATCAAATCAGCTGTTTCATAGATTATATAAGATTTCTGATATAACTTTCGTGTTCTTCCACCCCCTCTTTTCGAGGGCTCTTTCCCCTTTGGG
CCTCTATTGTTCAACAAAGCATGAAAGGTTAGTTCCGAATAGAAGTAAACTAGTAGCTGGTTCGCATGCTGTCTTGTGCTTTCACTCAAATGAATGCATA
GCAATCTGA
AA sequence
>Potri.010G192501.1 pacid=42797773 polypeptide=Potri.010G192501.1.p locus=Potri.010G192501 ID=Potri.010G192501.1.v4.1 annot-version=v4.1
MLVERGREREFSHSILCRSLNLTCAQVRFHLHLSDQSNQLFHRLYKISDITFVFFHPLFSRALSPLGLYCSTKHERLVPNRSKLVAGSHAVLCFHSNECI
AI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.010G192501
[exp]
0 1
AT3G54350 FHA EMB1967 embryo defective 1967, Forkhea... Potri.005G234300
[exp]
3.00 0.8629
AT1G70460 AtPERK13, RHS10 proline-rich extensin-like rec... Potri.010G041401
[exp]
6.24 0.7884
AT3G21320 unknown protein Potri.003G045000
[exp]
7.34 0.8508
AT1G09730 Cysteine proteinases superfami... Potri.017G044000
[exp]
9.16 0.8495
AT3G05380 MYB ALY2, ATALY2 ARABIDOPSIS THALIANA ALWAYS EA... Potri.013G020500
[exp]
13.11 0.8434
AT2G11520 CRCK3 calmodulin-binding receptor-li... Potri.006G064200
[exp]
15.68 0.7630 Pt-CRCK3.1
AT3G06250 FAR1_related FRS7 FAR1-related sequence 7 (.1) Potri.010G029000
[exp]
17.14 0.8211
AT5G04930 ALA1 aminophospholipid ATPase 1 (.1... Potri.010G246200
[exp]
17.20 0.7905
AT2G34930 disease resistance family prot... Potri.015G024500
[exp]
19.74 0.8344
Potri.011G062401
[exp]
20.59 0.8346

Potri.010G192501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.