Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39950 444 / 1e-147 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G064500 [exp] 1039 / 0 AT2G39950 344 / 3e-109 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040223 [exp] 643 / 0 AT2G39950 404 / 2e-132 unknown protein Lus10028266 [exp] 636 / 0 AT2G39950 404 / 1e-132 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G192800.2 pacid=42797759 polypeptide=Potri.010G192800.2.p locus=Potri.010G192800 ID=Potri.010G192800.2.v4.1 annot-version=v4.1 ATGGCTAATTCTAGAAAGCAAGAATTCAACGAAGATCGCGTTGAACAATCAAACGTTAACGATTTCGACGACTCATCGTCGATATCGAGCGCCGGTGGAA CCTCTACCGCGGGATCTGGCAGGGTTTCGGCAGAGCGGAGCGAGCCAAGTGAGGCTGGGTTAACGGAGCGATTGACGGACATTCTAGTGGACCAAGGAGA CGGAGATTTGTTGCTTCAAAGGAACAATCGTGAAGATAGGGTTTTGCAGTGGCTGCAAGCGCTAGACATGCAGGTCATGGGAGCTTGTAGAGCTGATGAG AGGTTAAAGCCGTTGTTGAAACTGAATGCTTCCAGTGGCGTGGCCGAGGACCGGCTCTTAGCACATCTCAGCCAGCACTTTGAGCCGTCAGAGGTTGGTA TGCTAGCTAGGTGTTTCTGCATACCTCTGGTTTCGATTCGTGTTGGGAAGATTAACAAGCAAGGGACTCTATTGTGCCCGACTACCATAAGGGGGGATTT AAATCTTACACTATTGCCAGCGTCTGGTCTGCGCCTCTCATTCATTGGTGATGATGGTAGTACAGAAAGGCTGTTCACCCTAAGTAGTAAAACCCATTGT CCTGCTGTTGAAGTTCATGAGATCCCTGCAGACAGTTCTGGCCGATCTTTCAACTTAAAGATCTCAGATGGCAGAGTTTTTTACTTTTGGTGCTCGGAGA AATCAAAACTTTTGGGAATTGAATTACTTGCAAAGATGAAAGATGTACTAAAGAGGAAACCATCTATAGCTGATTTAACCGGAATCAGCAAGTCACGTCT TGATTGCTTTGCAACTCACCTTCGGGCCTTCCTTGTGGGAAGCAATGGCAGGGAAATTTCTACTTGTTCTCTTGCCACTTCTTCTACCACTCCGGACGTC TCTGATTCAACCTCCACAACAAAGTCTCTTCGTTCCAGGCATACTGGCAGTCTGGCAGTCAAAACGAATTCAGCTTATCAGGGAAGTCTCAGTCCTAGAT CAAGTTCCTTCAAAGAGGGCCTACCCAGAAGCTTGTCTTCTTCAAGGAATGCCACCAGGGAAAAGTTAAGGCGTCGTGTGGACAACCATCTTTCAGCAGT TGATAACATAATGGCTGCATTGCCACTCAGCATTGATGTGACTTGCAATCAATCCGGGAATGAAAAATTGCAGGAAGCTAAGAGCTGCCCTTTGGCACCC TCTAGTGTTCTTGAATCTCTTGGTAAATTGTCTTTGCCACCAATTCAGCTCCCCGTGTCTCATGTTCTGTCTAGTCCACATGTTTTCTCTCCGTACTATT GTTGGTGCCCCCAAGGTACATCGAGTTTGCAATATCCTTCCACACCTTCAGAAATATCTACCTCATCGGTTGAATCACCTTTACTGCCCCCCTTTCCTCC ATTATTATCCACCGGTAGACCATCCAACCTGTTAAGCCCTATACCACCTCTCAGTTTGGCTGACTTCCCCTCGCTGGATTTTCCTGCTTTGCTGCCAGAC CCATTAGTTCGGTTGCCAATTCCGAGTTCACAGCAAATCCCAACTTTCACTCCTTTAATGTGTGACCCCATTGTTCACATTCCACTCATTGATGTTTGTT CCTCGGGTCAAGGCTACCTGGTCAGTGCTGGACCGACTATTGCAGGTCCTATTCCACCTTTGCACCCAAGACTTGTAAACCCATTGATTCCTGAAACTGC TGAATCTGTGGTGGAGAAGGGTGCGAGAGAGACTCTGAGACTGCTTATCAGCAGTACAAGCCAAACCAATTCTCAATTCATGAATGTCCTACCAGTTGTG CTAACCAATACTGATCAGACGAGTATACTTGCTGGTGGAAGCTGGAGCCTTTACACAGGAACCAGAGATGTGGATGCTATTGCAAATAGAATTGCCACCA TGGGCCTGGTTTCATTGTCCGAGTCCTCTATAGGCAACAGTGTTGCAGATATAAGTGGCGGCTGTGATAATACCAACGCTTTGCCTGATAATCTGCCTGA TGGATCTAGCGTTTTGGGTGGGCCATATTCTGAAGACGAAGGTACTATGTTTTCGAACGCTGGGAAAGGAACCAATTAA
AA sequence Show only first row Show all	>Potri.010G192800.2 pacid=42797759 polypeptide=Potri.010G192800.2.p locus=Potri.010G192800 ID=Potri.010G192800.2.v4.1 annot-version=v4.1 MANSRKQEFNEDRVEQSNVNDFDDSSSISSAGGTSTAGSGRVSAERSEPSEAGLTERLTDILVDQGDGDLLLQRNNREDRVLQWLQALDMQVMGACRADE RLKPLLKLNASSGVAEDRLLAHLSQHFEPSEVGMLARCFCIPLVSIRVGKINKQGTLLCPTTIRGDLNLTLLPASGLRLSFIGDDGSTERLFTLSSKTHC PAVEVHEIPADSSGRSFNLKISDGRVFYFWCSEKSKLLGIELLAKMKDVLKRKPSIADLTGISKSRLDCFATHLRAFLVGSNGREISTCSLATSSTTPDV SDSTSTTKSLRSRHTGSLAVKTNSAYQGSLSPRSSSFKEGLPRSLSSSRNATREKLRRRVDNHLSAVDNIMAALPLSIDVTCNQSGNEKLQEAKSCPLAP SSVLESLGKLSLPPIQLPVSHVLSSPHVFSPYYCWCPQGTSSLQYPSTPSEISTSSVESPLLPPFPPLLSTGRPSNLLSPIPPLSLADFPSLDFPALLPD PLVRLPIPSSQQIPTFTPLMCDPIVHIPLIDVCSSGQGYLVSAGPTIAGPIPPLHPRLVNPLIPETAESVVEKGARETLRLLISSTSQTNSQFMNVLPVV LTNTDQTSILAGGSWSLYTGTRDVDAIANRIATMGLVSLSESSIGNSVADISGGCDNTNALPDNLPDGSSVLGGPYSEDEGTMFSNAGKGTN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39950			unknown protein		Potri.010G192800 [exp]	0	1
AT5G58870		FTSH9	FTSH protease 9 (.1)		Potri.009G043100 [exp]	4.79	0.8749
AT3G26922			F-box/RNI-like superfamily pro...		Potri.011G104300 [exp]	4.89	0.8659
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Potri.013G089000 [exp]	6.16	0.8708
AT4G14200			Pentatricopeptide repeat (PPR)...		Potri.002G235900 [exp]	9.89	0.8452
AT1G63850			BTB/POZ domain-containing prot...		Potri.004G154600 [exp]	11.83	0.8548
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Potri.001G351532 [exp]	13.26	0.8327
AT5G35460			unknown protein		Potri.006G145600 [exp]	22.91	0.8207
AT2G03690			coenzyme Q biosynthesis Coq4 f...		Potri.010G157500 [exp]	23.23	0.8370
AT1G22770		FB, GI	gigantea protein (GI) (.1)		Potri.005G196700 [exp]	23.62	0.8185	GI.1
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Potri.010G105700 [exp]	36.46	0.7705	FKF1.1

Compare expression of checked genes

Potri.010G192800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.