Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39940 790 / 0 COI1 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) AT4G03190 299 / 2e-93 ATGRH1, ATGER1, AFB1, GRH1 AUXIN SIGNALING F BOX PROTEIN 1, GRR1-like protein 1 (.1) AT3G62980 279 / 9e-86 AtTIR1, TIR1 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) AT5G49980 273 / 3e-83 AFB5 auxin F-box protein 5 (.1) AT1G12820 267 / 1e-81 IPS1, AFB3 auxin signaling F-box 3 (.1) AT4G24390 265 / 3e-80 AFB4 auxin signaling F-box 4, RNI-like superfamily protein (.1.2) AT3G26810 263 / 8e-80 AFB2 auxin signaling F-box 2 (.1) AT4G15475 61 / 2e-09 F-box/RNI-like superfamily protein (.1) AT2G25490 58 / 1e-08 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT3G07550 56 / 4e-08 RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G064400 [exp] 1076 / 0 AT2G39940 794 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Potri.004G033900 [exp] 299 / 1e-93 AT1G12820 654 / 0.0 auxin signaling F-box 3 (.1) Potri.011G042400 [exp] 290 / 5e-90 AT3G62980 649 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.002G207800 [exp] 276 / 1e-84 AT3G62980 937 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.005G159300 [exp] 275 / 6e-84 AT5G49980 934 / 0.0 auxin F-box protein 5 (.1) Potri.002G102700 [exp] 272 / 7e-83 AT5G49980 911 / 0.0 auxin F-box protein 5 (.1) Potri.014G134800 [exp] 264 / 2e-80 AT3G62980 947 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.001G323100 [exp] 260 / 5e-79 AT3G26810 893 / 0.0 auxin signaling F-box 2 (.1) Potri.017G061600 [exp] 255 / 6e-77 AT3G26810 902 / 0.0 auxin signaling F-box 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014836 [exp] 876 / 0 AT2G39940 827 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Lus10040224 [exp] 868 / 0 AT2G39940 816 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Lus10028265 [exp] 862 / 0 AT2G39940 816 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Lus10009883 [exp] 511 / 7e-177 AT2G39940 480 / 4e-165 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Lus10020086 [exp] 291 / 1e-90 AT3G62980 644 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10006738 [exp] 289 / 1e-89 AT1G12820 647 / 0.0 auxin signaling F-box 3 (.1) Lus10018425 [exp] 276 / 1e-84 AT3G62980 593 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10018426 [exp] 279 / 2e-84 AT3G62980 634 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10011262 [exp] 263 / 4e-80 AT3G62980 588 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10035160 [exp] 245 / 4e-73 AT3G26810 894 / 0.0 auxin signaling F-box 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G192900.2 pacid=42797049 polypeptide=Potri.010G192900.2.p locus=Potri.010G192900 ID=Potri.010G192900.2.v4.1 annot-version=v4.1 ATGGAAGAAATTCAGAACAGAAAAATGAATAACTTGAATTGTAGCGGAGGCGGGGTTGGAGGAGGGATGTCCGACGTCGTACTAGAATGCGTGATGCCAT ACATACACGACCCGCGGGACCGCGACGCTGTTTCGTTAGTTTGCCGGAGATGGTACGAGCTAGATGCGCTAACACGAAAGCACGTGACAATAGCTTTATG TTACAGTACAAGTCCAGATCGATTACAACGTCGTTTTAAGCACCTCGAATCATTAAAGATGAAAGGGAAGCCACGGGCTGCTATGTTTTTTAATCTGATA CCGGACGATTGGGGAGGGTTTGTGACTCCATGGGTTAATGAAATAGCGGAGAGTTTTAATTGCTTGAAATCGCTTCATTTTAGGAGGATGATTGTTAAAG ATTCGGATCTAGAGTTGCTTGCTAGTTCTAGAGGGAAAGTTTTGCAGGTTTTGAAGCTTGACAAGTGCTCTGGGTTTTCCACTGATGGCCTTTCGCACAT CGGTCGCTCTTGCAGGCAATTGAGAACATTATTTTTGGAAGAGAGTGCAATAGCTTATGAGAAAGACGGTGACTGGCTCCATGAGCTCGCTACAAACAAT ACAGTTCTCGAGACTCTAAATTTTTACATGACGGATCTTACCAAAGTCAGATTGGAAGATCTTGAGCTTCTTGCCAAGAACTGTCGTTCATTAGTATCTG TGAAGATTAGCGACTGTGAAATCTTGGAACTTGTTGGTTTCTTTCGTGCTGCATCTGCTATAGAAGAATTTTGTGGAGGTTCCTTCAATGAGCCAGATCA ACCAGGGAAGTACTCTGCTGTCGTATTCCCCCCAAAATTATGCCGTTTGGGTCTCAGCTATATGGAGAAGAATGTAATGTCAATAGTGTTCCCTTTTGCA TCCCTGCTCAAAAAGTTGGATCTCCTCTATGTATTGCTTGGCACAGAAGATCATTGTGTTTTAGTCCAAAGGTGCCCCAACCTAGAAGTTCTTGAGACAA GAAATGTTATTGGAGATAGAGGGCTGGAAGCTCTTGCCCGGAGTTGTAAGCGACTAAAGAGGCTTAGAATAGAGCGTGGTGCTGATGAGCAGGAAATGGA GGATGTAGATGGCCGGGTATCACAAAGAGGACTAATCGCCTTAGCTCAGGGCTGCCTAGAACTTGAGTACATAGCTGTTTATGTTTCTGATATTAGCAAT GCAGCTCTGGAACATATGGGTGCATACTCAAAGAACCTCAATGATTTTCGCCTGGTCTTACTTGAGCAAGAAGATAGGATTACAGATCTGCCACTTGACA ATGGAGTCCGAGCTCTATTGAGGGGCTGTGAAAAGCTCCAAAGGTTCGGTCTGTATCTCCGATCAGGGGGTTTGACTGATGTAGGTCTTGGATATATTGG ACAGTACAGCAGACATGTGAGATGGATGATTCTGGGTAGCGTTGGGGAATCTGATGAGGGGCTTTTGGCATTTTCTATGGGCTGTCCTAGTCTGCAAAAA CTTGAAATGAGGGCCTGTTGCTTCACCGAGCGTGCACTGGCTAGAGCTGCCTTGCAACTGACTTCTCTGAGGTACTTGTGGGTGCATGGTTATAGAGAAA CCTCTAATGGTCATCGTGATCTTTTAACAATGGTTCGCCCATTTTGGAACATTGAATTGATTCCTTCTAGAAGGGTCGCGACGGTTAATAACGCAGGAGA AGATATTGTGTCTGAGAATCCAGCCCACATACTTGCATATTACTCCCTTGCTGGACCAAGAACAGACTTTCCAGATACTGTGATACCACTGGATCCAGCG AGGGTAGTTGCTGCGTAG
AA sequence Show only first row Show all	>Potri.010G192900.2 pacid=42797049 polypeptide=Potri.010G192900.2.p locus=Potri.010G192900 ID=Potri.010G192900.2.v4.1 annot-version=v4.1 MEEIQNRKMNNLNCSGGGVGGGMSDVVLECVMPYIHDPRDRDAVSLVCRRWYELDALTRKHVTIALCYSTSPDRLQRRFKHLESLKMKGKPRAAMFFNLI PDDWGGFVTPWVNEIAESFNCLKSLHFRRMIVKDSDLELLASSRGKVLQVLKLDKCSGFSTDGLSHIGRSCRQLRTLFLEESAIAYEKDGDWLHELATNN TVLETLNFYMTDLTKVRLEDLELLAKNCRSLVSVKISDCEILELVGFFRAASAIEEFCGGSFNEPDQPGKYSAVVFPPKLCRLGLSYMEKNVMSIVFPFA SLLKKLDLLYVLLGTEDHCVLVQRCPNLEVLETRNVIGDRGLEALARSCKRLKRLRIERGADEQEMEDVDGRVSQRGLIALAQGCLELEYIAVYVSDISN AALEHMGAYSKNLNDFRLVLLEQEDRITDLPLDNGVRALLRGCEKLQRFGLYLRSGGLTDVGLGYIGQYSRHVRWMILGSVGESDEGLLAFSMGCPSLQK LEMRACCFTERALARAALQLTSLRYLWVHGYRETSNGHRDLLTMVRPFWNIELIPSRRVATVNNAGEDIVSENPAHILAYYSLAGPRTDFPDTVIPLDPA RVVAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Potri.010G192900 [exp]	0	1
AT5G65180			ENTH/VHS family protein (.1.2)		Potri.007G086750 [exp]	23.32	0.5557
AT3G47160			RING/U-box superfamily protein...		Potri.011G050700 [exp]	28.51	0.5490
AT5G12850	C3HZnF	PEI1	CCCH-type zinc finger protein ...		Potri.009G053500 [exp]	33.70	0.5443
AT4G27780		ACBP2	acyl-CoA binding protein 2 (.1...		Potri.015G010200 [exp]	48.49	0.4924	ACBP1.2
AT4G14270			unknown protein		Potri.010G182800 [exp]	53.68	0.4844
AT5G64813		LIP1	Light Insensitive Period1, Ras...		Potri.007G080100 [exp]	151.25	0.4409
					Potri.004G074602 [exp]	159.14	0.4134
AT1G43760			DNAse I-like superfamily prote...		Potri.010G033133 [exp]	183.09	0.4060
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.004G082601 [exp]	185.61	0.3907
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Potri.012G112800 [exp]	190.52	0.4135

Compare expression of checked genes

Potri.010G192900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.