Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55800 625 / 0 SBPASE sedoheptulose-bisphosphatase (.1) AT1G43670 98 / 1e-22 FINS1, AtcFBP FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) AT3G54050 95 / 3e-21 HCEF1 high cyclic electron flow 1 (.1.2) AT5G64380 86 / 4e-18 Inositol monophosphatase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G063800 [exp] 694 / 0 AT3G55800 629 / 0.0 sedoheptulose-bisphosphatase (.1) Potri.005G191400 [exp] 100 / 2e-23 AT1G43670 609 / 0.0 FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) Potri.002G069000 [exp] 96 / 5e-22 AT1G43670 619 / 0.0 FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) Potri.016G106900 [exp] 95 / 2e-21 AT3G54050 619 / 0.0 high cyclic electron flow 1 (.1.2) Potri.016G109000 [exp] 92 / 4e-20 AT3G54050 526 / 0.0 high cyclic electron flow 1 (.1.2) Potri.017G042900 [exp] 80 / 3e-16 AT5G64380 552 / 0.0 Inositol monophosphatase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028261 [exp] 647 / 0 AT3G55800 611 / 0.0 sedoheptulose-bisphosphatase (.1) Lus10040228 [exp] 647 / 0 AT3G55800 611 / 0.0 sedoheptulose-bisphosphatase (.1) Lus10018885 [exp] 99 / 9e-23 AT1G43670 620 / 0.0 FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) Lus10028580 [exp] 97 / 3e-22 AT1G43670 618 / 0.0 FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) Lus10035545 [exp] 93 / 1e-20 AT3G54050 655 / 0.0 high cyclic electron flow 1 (.1.2) Lus10027748 [exp] 93 / 1e-20 AT3G54050 655 / 0.0 high cyclic electron flow 1 (.1.2) Lus10021115 [exp] 90 / 2e-19 AT3G54050 647 / 0.0 high cyclic electron flow 1 (.1.2) Lus10007061 [exp] 87 / 2e-18 AT5G64380 549 / 0.0 Inositol monophosphatase family protein (.1) Lus10017195 [exp] 80 / 5e-16 AT3G54050 601 / 0.0 high cyclic electron flow 1 (.1.2) Lus10020433 [exp] 78 / 1e-15 AT5G64380 528 / 0.0 Inositol monophosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0171 [poplar] [flax] Phospoesterase PF00316 [poplar] [flax] FBPase Fructose-1-6-bisphosphatase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.010G193300.1 pacid=42799196 polypeptide=Potri.010G193300.1.p locus=Potri.010G193300 ID=Potri.010G193300.1.v4.1 annot-version=v4.1 ATGGAGACTGGCATAGCGTGTTGTGCTCGTGGGGCTTACTTACCTGGTGTTTCTCAGCATTCAAAAGCTCCGGTGTCTCCGCAGTCCATTTCTCCATCCT GCAGTTCCAGGGGTCTGAAATCAAGCTCACTATTTGGGGAGACGTTGCGCTTCGTACCAAGATCATCACTGAAGGTTTCGAAGGCAAAGAACTCTTCCCT TGTGACCAGATGTGAGATTGGTGATAGCCTGGAAGAATTCCTCACAAAGGCAACTTCAGATAAGGGACTCATAAGGGTGCTGATGTGCATGGGAGAGGCA TTAAGGACCATTGCCTTCAAAGTCAGGACTGCTTCCTGTGGAGGAACAGCTTGTGTGAACTCCTTTGGAGATGAGCAGCTTGCTGTGGACATGCTTGCCA ACAATCTTCTTTTTGAGGCTTTGACTTACTCCCACTTCTGCAAATATGCTTGCTCTGAAGAAGTCCCTGAATTACAAGACATGGGTGGCCCAACCGAAGG TGGATTCAGTGTTGCTTTTGATCCACTTGATGGTTCCAGTATCGTCGACACAAATTTCTCTGTGGGCACCATCTTTGGAGTGTGGCCTGGAGACAAATTA ACTGGGGTAACAGGGAGAGATCAAGTTGCTGCAGCCATGGGGGTCTATGGTCCTCGAACTACATACGTTCTTGCTCTTAAAGACTACCCTGGAACCCACG AGTTTCTTCTTCTTGATGAAGGAAAATGGCAACATGTCAAAGAGACAACAGAGATCGGTGAAGGGAAACTTTTCTCCCCTGGAAATTTGAGAGCCACATT TGACAACGTTGACTATGAAAAGCTGATCAACTACTACGTTAAAGAGAAGTACACCTTGAGATACACAGGAGGAATGGTGCCAGATGTAAACCAGATCATT GTTAAAGAGAAGGGTGTCTTCACAAATGTTATTTCACCATCTTCCAAAGCCAAGCTGAGATTGTTATTTGAGGTTGCGCCATTGGGGTTCTTGGTTGAAA AGGCTGGGGGTTACAGTAGTGATGGATATCAGTCTGTGCTAGACAAGGAAATCATAAATCTTGATGATAGAACTCAAGTTGCATATGGCTCCAAGAATGA GATTATACGGTTTGAAGAAACTCTATACGGGAAATCAAGACTTAAGTCTGAGGGCGTTCCTGTCGGAGCTGCTGCTTAA
AA sequence Show only first row Show all	>Potri.010G193300.1 pacid=42799196 polypeptide=Potri.010G193300.1.p locus=Potri.010G193300 ID=Potri.010G193300.1.v4.1 annot-version=v4.1 METGIACCARGAYLPGVSQHSKAPVSPQSISPSCSSRGLKSSSLFGETLRFVPRSSLKVSKAKNSSLVTRCEIGDSLEEFLTKATSDKGLIRVLMCMGEA LRTIAFKVRTASCGGTACVNSFGDEQLAVDMLANNLLFEALTYSHFCKYACSEEVPELQDMGGPTEGGFSVAFDPLDGSSIVDTNFSVGTIFGVWPGDKL TGVTGRDQVAAAMGVYGPRTTYVLALKDYPGTHEFLLLDEGKWQHVKETTEIGEGKLFSPGNLRATFDNVDYEKLINYYVKEKYTLRYTGGMVPDVNQII VKEKGVFTNVISPSSKAKLRLLFEVAPLGFLVEKAGGYSSDGYQSVLDKEIINLDDRTQVAYGSKNEIIRFEETLYGKSRLKSEGVPVGAAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55800		SBPASE	sedoheptulose-bisphosphatase (...		Potri.010G193300 [exp]	0	1
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Potri.001G253300 [exp]	1.41	0.9802	Pt-AGT.2
AT1G56500			haloacid dehalogenase-like hyd...		Potri.013G007800 [exp]	2.00	0.9802
AT2G41680		NTRC	NADPH-dependent thioredoxin re...		Potri.006G049100 [exp]	2.00	0.9756
AT5G07900			Mitochondrial transcription te...		Potri.001G035200 [exp]	4.89	0.9765
AT2G04039			unknown protein		Potri.014G172800 [exp]	5.47	0.9710
AT2G32480		ARASP	ARABIDOPSIS SERIN PROTEASE (.1...		Potri.014G154000 [exp]	6.32	0.9741
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Potri.016G106900 [exp]	9.79	0.9687	FBP.1
AT4G24930			thylakoid lumenal 17.9 kDa pro...		Potri.015G097700 [exp]	12.00	0.9598
AT3G12685			Acid phosphatase/vanadium-depe...		Potri.010G176100 [exp]	12.16	0.9422
AT3G17040		HCF107	high chlorophyll fluorescent 1...		Potri.010G145000 [exp]	13.60	0.9528

Compare expression of checked genes

Potri.010G193300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.