Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G36280 759 / 0 L-Aspartase-like family protein (.1.2) AT4G18440 756 / 0 L-Aspartase-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G063800 [exp] 96 / 6e-21 AT3G55800 629 / 0.0 sedoheptulose-bisphosphatase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040229 [exp] 833 / 0 AT1G36280 744 / 0.0 L-Aspartase-like family protein (.1.2) Lus10028260 [exp] 822 / 0 AT1G36280 738 / 0.0 L-Aspartase-like family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00206 [poplar] [flax] Lyase_1 Lyase PF08328 [poplar] [flax] ASL_C Adenylosuccinate lyase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.010G193400.2 pacid=42797763 polypeptide=Potri.010G193400.2.p locus=Potri.010G193400 ID=Potri.010G193400.2.v4.1 annot-version=v4.1 ATGGAGTTTGCTTCTTCTTCTTCTTCTAGGGTTTTTAATAGAACCCACCAATTCTCACTCTTATCAACTCCACCACCAAGCCAAAAACCCAGCAGCCTCT TCAATCCATCTTTAAATGCTTTTTTTATTCGCTTCTCAACGACATCGTTTTCTCCTAGAGACTTGTCCTGCAAATCCACCCTCAGAGACACCACTACCAC CAGAATCGCCACACCCAAGATGGCTGAAAACGGCGTTCGTGATTTTGAGCTATCAAATTTGACGGCGTTATCCCCTTTGGACGGTCGTTACTGGAATAAA GTCAAGGACTTGTCTCCTTATATGAGTGAATACGGTCTAATTTATTATCGTGTTCTTGTTGAGATTAAATGGTTGTTGAAACTTTCACAAATTCCTGAAA TTACCGAGGTCCCGAACTTTAGTGAAGAAGCTGAGGCTTATTTGGAAGGGTTAATTGATGGATTTAGCATGGATGATGCCTTGGAAGTTAAGAACATTGA GAAAGTGACTAACCATGATGTAAAAGCAGTCGAGTATTTCTTGAAAAAGAAATGCCAATCGCATCCGGAGATTGCCAAGGTGCTTGAGTTTTTCCATTTT GCTTGCACATCCGAGGACATCAATAATCTTGCCCATGCATTGATGCTGAAAGAAGCAATGAATGGGGTTGTATTTCCTGTCATGGATAAATTGATCAAAG CCATTTGTAAATTGGCTGAAGATAATGCTTCCACTCCTATGCTTTCTCGCACTCATGGACAGCCAGCTTCACCAACAACTCTGGGGAAGGAAATGGCAGT TTTTGCAGCCAGGCTAAGCGAACAAAGGCATGAAATTTCTCAAGTTAAGATAAAGGGGAAGTTTGCTGGTGCTGTTGGAAACTACAATGCCCATTTTTCA GCATATCCCAGTGTTAATTGGCCTCTAATTGCAAAAGAGTTTGTGGAATCTCTTGGATTGTGTTTTAACCCCTATGTTACTCAGATTGAGCCACATGACT ACATGGCAAGACTTTTTCATGCAATTATTGTTTTTAACACTATATTGATCGATTTTGATAGAGATATATGGGGCTATGTATCATTGGCATACTTTAAGCA GACAACCAAGGCTGGTGAGATTGGGTCCTCGACTATGCCTCACAAAGTAAATCCTATTGATTTTGAAAATAGTGAAGGCAATCTTGGGAAAGCCAATGGA AATTTATCTCATCTTGGTGAGAAGTTGCCAGTTTCACGCTGGCAGCGTGACTTGACTGATTCAACTGTTCTGAGGAATATGGGTGAAGGCTTAGGACATT CTCTTCTTGCCTACAAAAGTGCGTTGCAAGGAATAGCAAAGCTTCAGGTCAATGAAACTCGCTTGAGTGAAGACTTGAACCAATCATGGGAGGTGCTTGC TGAACCAATACAGACTGTGATGCGCCGATATAGTGTTCCTGAGCCATATGAAAAGCTGAAAGAGCTAACCAGGGGAAGAGCTGTTACCAAAGATAGCATA AAGGAGTTCATTGAAGGCTTGGAATTACCCAAAGAAGCAAAGGATTATCTTTTGGAGTTGACACCCCATACCTATGTTGGAGCAGCTATTGAATTGAGTA AGACTCTGGATAATGCTATCAGTTTGGTAAATGGGGTGACAACTTTGTAA
AA sequence Show only first row Show all	>Potri.010G193400.2 pacid=42797763 polypeptide=Potri.010G193400.2.p locus=Potri.010G193400 ID=Potri.010G193400.2.v4.1 annot-version=v4.1 MEFASSSSSRVFNRTHQFSLLSTPPPSQKPSSLFNPSLNAFFIRFSTTSFSPRDLSCKSTLRDTTTTRIATPKMAENGVRDFELSNLTALSPLDGRYWNK VKDLSPYMSEYGLIYYRVLVEIKWLLKLSQIPEITEVPNFSEEAEAYLEGLIDGFSMDDALEVKNIEKVTNHDVKAVEYFLKKKCQSHPEIAKVLEFFHF ACTSEDINNLAHALMLKEAMNGVVFPVMDKLIKAICKLAEDNASTPMLSRTHGQPASPTTLGKEMAVFAARLSEQRHEISQVKIKGKFAGAVGNYNAHFS AYPSVNWPLIAKEFVESLGLCFNPYVTQIEPHDYMARLFHAIIVFNTILIDFDRDIWGYVSLAYFKQTTKAGEIGSSTMPHKVNPIDFENSEGNLGKANG NLSHLGEKLPVSRWQRDLTDSTVLRNMGEGLGHSLLAYKSALQGIAKLQVNETRLSEDLNQSWEVLAEPIQTVMRRYSVPEPYEKLKELTRGRAVTKDSI KEFIEGLELPKEAKDYLLELTPHTYVGAAIELSKTLDNAISLVNGVTTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G36280			L-Aspartase-like family protei...		Potri.010G193400 [exp]	0	1
AT1G24040			Acyl-CoA N-acyltransferases (N...		Potri.010G095800 [exp]	1.41	0.9125
AT5G11170			DEAD/DEAH box RNA helicase fam...		Potri.018G028600 [exp]	1.73	0.9069
AT4G10790			UBX domain-containing protein ...		Potri.001G085600 [exp]	2.64	0.9227
AT3G04610		FLK	flowering locus KH domain, RNA...		Potri.005G056100 [exp]	3.46	0.8982
AT1G09520			unknown protein		Potri.010G002200 [exp]	3.87	0.9019
AT1G07030			Mitochondrial substrate carrie...		Potri.009G077600 [exp]	4.89	0.9023
AT5G11170			DEAD/DEAH box RNA helicase fam...		Potri.006G253100 [exp]	5.74	0.8882
AT1G61620			phosphoinositide binding (.1)		Potri.004G026800 [exp]	6.00	0.8787
AT4G26000		PEP	PEPPER, RNA-binding KH domain-...		Potri.018G004000 [exp]	8.94	0.8962
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Potri.007G028300 [exp]	10.95	0.8912

Compare expression of checked genes

Potri.010G193400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.