Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39920 194 / 1e-60 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3) AT4G29270 89 / 1e-20 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G44020 83 / 2e-18 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT1G04040 82 / 6e-18 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G25150 81 / 2e-17 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G29260 81 / 2e-17 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT2G38600 78 / 1e-16 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G51260 78 / 2e-16 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G24780 56 / 8e-09 ATVSP1, ATVSP, VSP1 vegetative storage protein 1 (.1.2) AT5G24770 53 / 5e-08 ATVSP2, VSP2 vegetative storage protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G257700 [exp] 84 / 7e-19 AT1G04040 317 / 1e-109 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.006G152900 [exp] 81 / 2e-17 AT4G29260 292 / 3e-100 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.016G139700 [exp] 78 / 1e-16 AT2G38600 347 / 1e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.010G066500 [exp] 74 / 6e-15 AT1G04040 285 / 5e-97 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.006G110900 [exp] 68 / 3e-13 AT2G38600 322 / 2e-112 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.004G232900 [exp] 67 / 1e-12 AT5G51260 346 / 3e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.001G191000 [exp] 66 / 3e-12 AT4G25150 259 / 8e-87 HAD superfamily, subfamily IIIB acid phosphatase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028259 [exp] 259 / 3e-85 AT2G39920 194 / 2e-60 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3) Lus10040231 [exp] 247 / 1e-80 AT2G39920 200 / 1e-62 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3) Lus10002714 [exp] 178 / 2e-54 AT2G39920 180 / 7e-56 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3) Lus10011140 [exp] 85 / 4e-19 AT4G29270 251 / 8e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10043042 [exp] 83 / 4e-18 AT4G29270 251 / 7e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10023731 [exp] 79 / 7e-17 AT1G04040 273 / 3e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10011774 [exp] 79 / 8e-17 AT1G04040 272 / 8e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10017060 [exp] 65 / 2e-12 AT2G38600 216 / 2e-71 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10014968 [exp] 61 / 3e-10 AT4G29260 231 / 1e-75 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10013478 [exp] 57 / 2e-09 AT4G25150 301 / 1e-103 HAD superfamily, subfamily IIIB acid phosphatase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF03767 [poplar] [flax] Acid_phosphat_B HAD superfamily, subfamily IIIB (Acid phosphatase)
Representative CDS sequence Show only first row Show all	>Potri.010G193500.2 pacid=42798346 polypeptide=Potri.010G193500.2.p locus=Potri.010G193500 ID=Potri.010G193500.2.v4.1 annot-version=v4.1 ATGTCAGCTTACGCCCATCAAATGGAGAGGGAGTTCTCAGCTCAGAGTCTCTCCAGTAGAGGAGTTTCTGAGATGGGAAGCCATTATGTGGCGGAATCAG GGTTCTACATGACATCCTTTGCAGCAACTATCTTCATTGCTTCCCTTGTAACTGTTGGAGTTTTATTGACCACCTTGCTGGTTTCTCTAGCCGTTATGTT ACAATCCTGCCAGGATAGGAGTAAAGGAGTTATTGAGATCCAAAAATTAAGTCATGATTACAATTACTGCAAGATGTTTGCTTTGCATGCAGAACTCAAC AGCTTGGGACCAGATGACTTCCCTTCAATGTGCGCGAGTCTTGCCGTTCAGCACAATAAAGGAGGAGCATATGAGAGAGATTTAAATGCTAGTCTGCTCA TGATTGAGAGATACTTTGACAGTCTTCTGCCTTTACATGATGGTCTAGATGTGTTATTGATGGATATTGACGACATATTTCCTTCAAATATTCGTTATAC TTCTCTATTGATGAACAGAGTCCGTGATAATGGCTGTATTGATTGTTTTCAAGAGGAAAAGCATCTGAAGCAAATACTGTGTCTCAGTTTATACACAAAA CTTCAAGCTAGTGGGTGGTCGTTGATTTTGTTGTCAAGAAAGCCAGAGAAACTAAGGAATGCCACCATACAGCACCTAATTTCTGCAGGATACAGGGGTT GGTCCTCAACGATAATGAGGTCAGATAATGAAATAGAGATTGATAGCCGTGAATATTTCTCAAGGCGAATGGTGGCAATGCAGAAAGCAGGCTTCCGTAT CTCAGGTGTAATTAGCAGCCAGATGGATGCTTTAACGAGTGCGTCTTTAGGACACCGTGTTTTTAAGCTTCCAAATCCGGTATATTACAATTTTGAGCAT CACACAGGGAACTCCCGTGTGCTGGAATAG
AA sequence Show only first row Show all	>Potri.010G193500.2 pacid=42798346 polypeptide=Potri.010G193500.2.p locus=Potri.010G193500 ID=Potri.010G193500.2.v4.1 annot-version=v4.1 MSAYAHQMEREFSAQSLSSRGVSEMGSHYVAESGFYMTSFAATIFIASLVTVGVLLTTLLVSLAVMLQSCQDRSKGVIEIQKLSHDYNYCKMFALHAELN SLGPDDFPSMCASLAVQHNKGGAYERDLNASLLMIERYFDSLLPLHDGLDVLLMDIDDIFPSNIRYTSLLMNRVRDNGCIDCFQEEKHLKQILCLSLYTK LQASGWSLILLSRKPEKLRNATIQHLISAGYRGWSSTIMRSDNEIEIDSREYFSRRMVAMQKAGFRISGVISSQMDALTSASLGHRVFKLPNPVYYNFEH HTGNSRVLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39920			HAD superfamily, subfamily III...		Potri.010G193500 [exp]	0	1
AT1G35530			DEAD/DEAH box RNA helicase fam...		Potri.013G110200 [exp]	6.00	0.8253
AT4G24900			unknown protein		Potri.015G096700 [exp]	17.66	0.8149
AT1G27620			HXXXD-type acyl-transferase fa...		Potri.005G230900 [exp]	19.44	0.8151
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Potri.012G049300 [exp]	20.97	0.7515
					Potri.005G084651 [exp]	27.56	0.8222
AT2G25910			3'-5' exonuclease domain-conta...		Potri.018G058900 [exp]	34.20	0.7268
AT2G01910		ATMAP65-6	Microtubule associated protein...		Potri.008G139700 [exp]	34.27	0.7851
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Potri.006G052700 [exp]	34.30	0.8094
AT1G56700			Peptidase C15, pyroglutamyl pe...		Potri.005G005800 [exp]	38.10	0.7612
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.010G043500 [exp]	43.23	0.7866

Compare expression of checked genes

Potri.010G193500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.