Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55780 424 / 2e-147 Glycosyl hydrolase superfamily protein (.1) AT3G61810 192 / 1e-57 Glycosyl hydrolase family 17 protein (.1) AT2G16230 191 / 6e-56 O-Glycosyl hydrolases family 17 protein (.1) AT4G26830 189 / 2e-55 O-Glycosyl hydrolases family 17 protein (.1) AT1G66250 188 / 1e-54 O-Glycosyl hydrolases family 17 protein (.1) AT3G07320 182 / 1e-52 O-Glycosyl hydrolases family 17 protein (.1) AT5G56590 181 / 7e-52 O-Glycosyl hydrolases family 17 protein (.1) AT2G05790 173 / 3e-49 O-Glycosyl hydrolases family 17 protein (.1) AT5G42720 171 / 5e-49 Glycosyl hydrolase family 17 protein (.1) AT2G01630 169 / 1e-48 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G261800 [exp] 189 / 3e-55 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G183800 [exp] 185 / 3e-54 AT2G16230 515 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G182321 [exp] 184 / 2e-53 AT2G16230 506 / 4e-177 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G182000 [exp] 183 / 2e-53 AT2G16230 506 / 2e-177 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G184900 [exp] 183 / 3e-53 AT2G16230 498 / 2e-174 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G182500 [exp] 182 / 6e-53 AT2G16230 504 / 4e-177 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G185100 [exp] 181 / 8e-53 AT2G16230 514 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G182800 [exp] 182 / 1e-52 AT2G16230 514 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G184600 [exp] 181 / 2e-52 AT2G16230 493 / 3e-172 O-Glycosyl hydrolases family 17 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040232 [exp] 442 / 1e-154 AT3G55780 402 / 2e-138 Glycosyl hydrolase superfamily protein (.1) Lus10028258 [exp] 437 / 6e-153 AT3G55780 402 / 9e-139 Glycosyl hydrolase superfamily protein (.1) Lus10004391 [exp] 182 / 1e-52 AT5G55180 602 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10023245 [exp] 182 / 1e-52 AT5G24318 561 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10038211 [exp] 177 / 1e-50 AT3G07320 614 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10012080 [exp] 176 / 2e-50 AT2G16230 564 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10023576 [exp] 174 / 1e-49 AT2G16230 644 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10004869 [exp] 170 / 7e-49 AT2G27500 491 / 5e-174 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10015151 [exp] 171 / 1e-48 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10020618 [exp] 170 / 1e-48 AT2G27500 494 / 5e-175 Glycosyl hydrolase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Potri.010G193700.2 pacid=42797466 polypeptide=Potri.010G193700.2.p locus=Potri.010G193700 ID=Potri.010G193700.2.v4.1 annot-version=v4.1 ATGAATCCTCTCGTTTCCTTCCTCTCTTTCTGTTTCTTTTCCCTCACACTCTTCCCTTCCATCACCACCGCCACCTCCCTCCCTCCCTCCCCCTCCCCCT CCGTCTCCACCACCACCACATTGGGCGTCACCTACACCTCGCCGCCGCCGCTTTCCCCTTCCTCTACACCCTCCCTCCCAGCGGATCGCGTCCTCTCCGC TCTCTCCTCCCTCAACATCCACTCTCTCCGCCTCCCAAACCCCGATCCTAACCTAATCCGCTCTTTCGCTTTCACCAACACCTCTCTTTTCCTCTCCATC CCTAACTCCCTCCTCCCTCCTCTCGCCGCCAACCGCTCACTCGCTGCCCGCTGGCTTTACGGTCACGTCCTCCCTTTCTACCCTCGCTCGAAGATTTCTC TCATTTCAGTTGGAGACGATGCCGTCTCGCAATTGTCTCCCTTTTTACTTCCTGCAATCAGGAACGTGTACCTGGCACTCCGTGACCTCGGGATTAAAAA AATCTCAGTCTCCACGACTTTCTCTTTCGTGAACGTTATTACGACGCCATTTCCACCTTCTTCTGGTACTTTCCAAGAACCGCTTGGGGAATTATTGATA AAGCCATTGCTTCAGTTCTTGGAAGATACAAATTCATCGTTCTTGGTGAATCTTTATCCGTATAACTTGTATAGGATCAACTCTGAGATTCCATTAGGGT TTGCTTTGTTTCAAGAGCATCCATTCAATTTTAGAGATGATTTGATTACTGGAGTTAGATACTGGAATCTTTTCGATATGATGGTGGATGCGGTTGTAAG TGCACTTGCGGTGGCCGGACATGAGAACCTTCCGGTGATAGTGGCGGAGACTGGGTGGCCGAGTACCGGTGGAGATCAAACTGAGGTTGATGCGAAGCTA GAGTATGCCGAGATGTATATTAGGGGTTTGGTCGGGCATTTAAGGTCTGGGGTGGGCACCCCGTTAAGGAAAGAAGGGGTTTCACAGGCTTATATATTCG AGTTGATTGATAAGGATAATGTGAAACAAGGGACTAGAAGTTGGGGGATTTTGTATGCGAATATGAGTAAGAAGTATCATGTTGAGTTCTCTGGTTGTGG TGGAAGTGGCGTGGGAAGGGTGCTTTCGATGCGTGTTTGCTTGGTATGGTGGTTATTGGCTGGTTTCTTTCTTGTTTAG
AA sequence Show only first row Show all	>Potri.010G193700.2 pacid=42797466 polypeptide=Potri.010G193700.2.p locus=Potri.010G193700 ID=Potri.010G193700.2.v4.1 annot-version=v4.1 MNPLVSFLSFCFFSLTLFPSITTATSLPPSPSPSVSTTTTLGVTYTSPPPLSPSSTPSLPADRVLSALSSLNIHSLRLPNPDPNLIRSFAFTNTSLFLSI PNSLLPPLAANRSLAARWLYGHVLPFYPRSKISLISVGDDAVSQLSPFLLPAIRNVYLALRDLGIKKISVSTTFSFVNVITTPFPPSSGTFQEPLGELLI KPLLQFLEDTNSSFLVNLYPYNLYRINSEIPLGFALFQEHPFNFRDDLITGVRYWNLFDMMVDAVVSALAVAGHENLPVIVAETGWPSTGGDQTEVDAKL EYAEMYIRGLVGHLRSGVGTPLRKEGVSQAYIFELIDKDNVKQGTRSWGILYANMSKKYHVEFSGCGGSGVGRVLSMRVCLVWWLLAGFFLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55780			Glycosyl hydrolase superfamily...		Potri.010G193700 [exp]	0	1
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Potri.002G020249 [exp]	3.16	0.9001
AT3G15820		ROD1	REDUCED OLEATE DESATURATION 1,...		Potri.001G204100 [exp]	3.46	0.9032
AT1G03820			unknown protein		Potri.007G137001 [exp]	8.83	0.8968
AT4G22250			RING/U-box superfamily protein...		Potri.014G158900 [exp]	19.59	0.8905
AT5G60880		BASL	breaking of asymmetry in the s...		Potri.015G048600 [exp]	26.32	0.8831
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Potri.004G121100 [exp]	28.42	0.8836
AT3G55430			O-Glycosyl hydrolases family 1...		Potri.008G056000 [exp]	28.74	0.8797	Pt-GNS2.1
AT5G56000		Hsp81.4, AtHsp9...	HEAT SHOCK PROTEIN 90.4, HEAT ...		Potri.011G163932 [exp]	32.03	0.8775
AT3G44610			Protein kinase superfamily pro...		Potri.008G024000 [exp]	33.66	0.8816
AT3G21770			Peroxidase superfamily protein...		Potri.014G135580 [exp]	34.98	0.8597

Compare expression of checked genes

Potri.010G193700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.