Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55770 324 / 1e-114 LIM WLIM2b WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7) AT2G39900 312 / 6e-110 LIM WLIM2a WLIM2a, GATA type zinc finger transcription factor family protein (.1) AT2G45800 263 / 3e-90 LIM PLIM2a PLIM2a, GATA type zinc finger transcription factor family protein (.1.2) AT1G01780 254 / 8e-87 LIM PLIM2b PLIM2b, GATA type zinc finger transcription factor family protein (.1) AT3G61230 246 / 1e-83 LIM PLIM2c PLIM2c, GATA type zinc finger transcription factor family protein (.1) AT1G10200 217 / 1e-72 LIM WLIM1, SF3 WLIM1, GATA type zinc finger transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G063600 [exp] 372 / 1e-133 AT3G55770 324 / 1e-114 WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7) Potri.001G107100 [exp] 268 / 3e-92 AT3G61230 256 / 6e-87 PLIM2c, GATA type zinc finger transcription factor family protein (.1) Potri.003G124300 [exp] 267 / 6e-92 AT3G61230 264 / 2e-90 PLIM2c, GATA type zinc finger transcription factor family protein (.1) Potri.002G157300 [exp] 257 / 3e-88 AT1G01780 308 / 8e-108 PLIM2b, GATA type zinc finger transcription factor family protein (.1) Potri.014G080900 [exp] 254 / 4e-87 AT1G01780 307 / 2e-107 PLIM2b, GATA type zinc finger transcription factor family protein (.1) Potri.001G292900 [exp] 229 / 4e-77 AT1G10200 317 / 9e-112 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.015G072400 [exp] 225 / 9e-76 AT1G10200 277 / 5e-96 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.009G087200 [exp] 225 / 1e-75 AT1G10200 316 / 2e-111 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.012G077200 [exp] 224 / 2e-75 AT1G10200 268 / 2e-92 WLIM1, GATA type zinc finger transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028257 [exp] 328 / 4e-116 AT3G55770 296 / 2e-103 WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7) Lus10040233 [exp] 339 / 1e-114 AT2G39910 386 / 6e-129 ARM repeat superfamily protein (.1) Lus10014781 [exp] 271 / 1e-93 AT1G01780 313 / 5e-110 PLIM2b, GATA type zinc finger transcription factor family protein (.1) Lus10029859 [exp] 245 / 3e-83 AT3G61230 268 / 9e-92 PLIM2c, GATA type zinc finger transcription factor family protein (.1) Lus10000287 [exp] 244 / 9e-83 AT3G61230 271 / 5e-93 PLIM2c, GATA type zinc finger transcription factor family protein (.1) Lus10020687 [exp] 244 / 1e-82 AT3G61230 259 / 2e-88 PLIM2c, GATA type zinc finger transcription factor family protein (.1) Lus10008476 [exp] 243 / 2e-82 AT3G61230 279 / 3e-96 PLIM2c, GATA type zinc finger transcription factor family protein (.1) Lus10004230 [exp] 228 / 9e-77 AT1G10200 281 / 1e-97 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10042140 [exp] 228 / 9e-77 AT1G10200 280 / 2e-97 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10043462 [exp] 223 / 2e-74 AT1G10200 260 / 2e-89 WLIM1, GATA type zinc finger transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00412 [poplar] [flax] LIM LIM domain
Representative CDS sequence Show only first row Show all	>Potri.010G193800.4 pacid=42798939 polypeptide=Potri.010G193800.4.p locus=Potri.010G193800 ID=Potri.010G193800.4.v4.1 annot-version=v4.1 ATGTCGTTTACTGGTACCCAACAGAAATGCAAGGCTTGTGAGAAGACTGTGTATCCTATGGAACTTCTATCAGCAGATGGGGTTGCTTACCATAAAACTT GCTTCAAGTGTTTTCACTGCAAAGGCACGTTAAAGCTAAGCAATTATTCTTCGATGGAGGGTGTATTGTACTGTAAGCCTCACTTTGAGCAGCTGTTCAA GGAGACCGGTAACTTCAACAAGAACTTTCAGTCACCTGCAAAGTCAGCTGAGAAGTTAAATCCTGAACTGACAAGGTCACCTAGCAAAGCTGCTAGCATG TTTTCAGGGACACAAGAAAAGTGCGCTACTTGCGGTAAAACTGCTTATCCGCTCGAGAAGGTAACAGTTGAAAGCCAAGCCTATCACAAATCATGTTTCA AGTGCTCGCACGGTGGCTGTGCTATAACACCATCAAATTATGCAGCACTTGAGGGCGTATTGTATTGCAAGCATCACTTCTCCCAACTTTTCAAGGAAAA GGGCAGCTACAACCACCTCATCAAGTCCGCAACAATGAAGCGTGCAGCGGCTTCTGTGCCAGAGGCTTAA
AA sequence Show only first row Show all	>Potri.010G193800.4 pacid=42798939 polypeptide=Potri.010G193800.4.p locus=Potri.010G193800 ID=Potri.010G193800.4.v4.1 annot-version=v4.1 MSFTGTQQKCKACEKTVYPMELLSADGVAYHKTCFKCFHCKGTLKLSNYSSMEGVLYCKPHFEQLFKETGNFNKNFQSPAKSAEKLNPELTRSPSKAASM FSGTQEKCATCGKTAYPLEKVTVESQAYHKSCFKCSHGGCAITPSNYAALEGVLYCKHHFSQLFKEKGSYNHLIKSATMKRAAASVPEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55770	LIM	WLIM2b	WLIM2b, GATA type zinc finger ...		Potri.010G193800 [exp]	0	1
AT1G04040			HAD superfamily, subfamily III...		Potri.002G257700 [exp]	2.23	0.9545
AT4G21450			PapD-like superfamily protein ...		Potri.013G147800 [exp]	3.46	0.9262
AT3G55770	LIM	WLIM2b	WLIM2b, GATA type zinc finger ...		Potri.008G063600 [exp]	4.00	0.9108
AT4G33945			ARM repeat superfamily protein...		Potri.009G106100 [exp]	5.29	0.9239
AT5G51560			Leucine-rich repeat protein ki...		Potri.012G128700 [exp]	5.47	0.9228
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Potri.002G061900 [exp]	7.14	0.9252	KDSA.1
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Potri.009G055900 [exp]	8.48	0.9206
AT3G24460			Serinc-domain containing serin...		Potri.018G076000 [exp]	9.11	0.8786
AT3G53850			Uncharacterised protein family...		Potri.010G198700 [exp]	9.27	0.8782
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Potri.005G199100 [exp]	10.39	0.9194	Pt-KDSA.2

Compare expression of checked genes

Potri.010G193800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.