Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07370 57 / 2e-11 ATPCNA1, PCNA1 proliferating cellular nuclear antigen 1 (.1) AT2G29570 55 / 2e-10 ATPCNA2, PCNA2 A. THALIANA PROLIFERATING CELL NUCLEAR ANTIGEN 2, proliferating cell nuclear antigen 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G040900 [exp] 53 / 5e-10 AT2G29570 484 / 9e-176 A. THALIANA PROLIFERATING CELL NUCLEAR ANTIGEN 2, proliferating cell nuclear antigen 2 (.1) Potri.001G247700 [exp] 53 / 5e-10 AT2G29570 475 / 4e-172 A. THALIANA PROLIFERATING CELL NUCLEAR ANTIGEN 2, proliferating cell nuclear antigen 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005874 [exp] 54 / 4e-10 AT2G29570 389 / 3e-138 A. THALIANA PROLIFERATING CELL NUCLEAR ANTIGEN 2, proliferating cell nuclear antigen 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0060 [poplar] [flax] DNA_clamp PF00705 [poplar] [flax] PCNA_N Proliferating cell nuclear antigen, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.010G193950.1 pacid=42798736 polypeptide=Potri.010G193950.1.p locus=Potri.010G193950 ID=Potri.010G193950.1.v4.1 annot-version=v4.1 ATGGGCACGAACATCGGTAACATGGAGAAGATATTGAAATTCGCCAATAACGATGGTATTGTCATTATCAAGGCTGATGGTGGTGGAGATACCGTCTATT TCATGTATGAAAGCCATAGCTTAGTTTGTGTTTTTGTTGTTTTGATCACTGTTGAGTGTGTTTTTCCTGTTCGGGAAGATTGGATTTTGTTTTTCAGTTT TTTTTTCTTTGATTGA
AA sequence Show only first row Show all	>Potri.010G193950.1 pacid=42798736 polypeptide=Potri.010G193950.1.p locus=Potri.010G193950 ID=Potri.010G193950.1.v4.1 annot-version=v4.1 MGTNIGNMEKILKFANNDGIVIIKADGGGDTVYFMYESHSLVCVFVVLITVECVFPVREDWILFFSFFFFD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07370		ATPCNA1, PCNA1	proliferating cellular nuclear...		Potri.010G193950 [exp]	0	1
AT5G42200			RING/U-box superfamily protein...		Potri.002G017400 [exp]	4.00	0.9484
AT1G77700			Pathogenesis-related thaumatin...		Potri.001G210400 [exp]	7.34	0.9643
AT3G16150		ASPGB1	asparaginase B1, N-terminal nu...		Potri.002G122900 [exp]	8.48	0.9551
					Potri.019G032001 [exp]	9.48	0.9078
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Potri.003G114400 [exp]	9.48	0.9438
AT2G32280			Protein of unknown function (D...		Potri.017G040900 [exp]	9.89	0.9309
AT4G05430			Carbohydrate-binding X8 domain...		Potri.019G007800 [exp]	10.81	0.9618
AT5G02140			Pathogenesis-related thaumatin...		Potri.006G088100 [exp]	11.22	0.9567
AT1G63310			unknown protein		Potri.001G452900 [exp]	14.00	0.9588
AT4G05430			Carbohydrate-binding X8 domain...		Potri.019G012000 [exp]	14.14	0.9574

Compare expression of checked genes

Potri.010G193950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.