Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01090 113 / 1e-28 Concanavalin A-like lectin family protein (.1) AT3G09035 90 / 4e-20 Concanavalin A-like lectin family protein (.1) AT3G09190 69 / 6e-13 Concanavalin A-like lectin family protein (.1) AT3G55550 49 / 5e-06 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 45 / 8e-05 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 44 / 0.0002 Concanavalin A-like lectin protein kinase family protein (.1) AT5G03350 42 / 0.0004 Legume lectin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G094900 [exp] 184 / 2e-55 AT5G01090 265 / 2e-86 Concanavalin A-like lectin family protein (.1) Potri.016G107200 [exp] 159 / 9e-46 AT5G01090 230 / 9e-73 Concanavalin A-like lectin family protein (.1) Potri.011G093700 [exp] 54 / 1e-07 AT5G55830 849 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G368300 [exp] 50 / 2e-06 AT5G55830 853 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.008G058400 [exp] 46 / 2e-05 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.005G189500 [exp] 46 / 3e-05 AT5G42120 671 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.003G196600 [exp] 45 / 5e-05 AT4G29050 663 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.011G053100 [exp] 44 / 0.0002 AT4G04960 735 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.010G200600 [exp] 44 / 0.0002 AT3G55550 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021117 [exp] 137 / 3e-37 AT5G01090 210 / 5e-65 Concanavalin A-like lectin family protein (.1) Lus10017194 [exp] 127 / 2e-33 AT5G01090 219 / 3e-68 Concanavalin A-like lectin family protein (.1) Lus10035542 [exp] 100 / 8e-24 AT5G01090 175 / 1e-51 Concanavalin A-like lectin family protein (.1) Lus10027751 [exp] 98 / 1e-22 AT5G01090 166 / 6e-48 Concanavalin A-like lectin family protein (.1) Lus10042795 [exp] 53 / 3e-07 AT5G42120 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029769 [exp] 50 / 2e-06 AT5G42120 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10015313 [exp] 50 / 3e-06 AT4G04960 761 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 49 / 3e-06 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10025441 [exp] 48 / 7e-06 AT4G04960 763 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 47 / 1e-05 AT2G37710 755 / 0.0 receptor lectin kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Potri.010G194700.1 pacid=42798512 polypeptide=Potri.010G194700.1.p locus=Potri.010G194700 ID=Potri.010G194700.1.v4.1 annot-version=v4.1 ATGGCTACATTCCCCATTTCCAGATCCACATTACCCTTTAACCTCTTAGTTCTTGTACTCCATCTACTCTGTCCCATTTCCACTTTCTCGCTTGTAACCC TGACCAGCAAAAACCCCAACTTCGATCCCCAAATTACCCTTCTCGGGGACGCCAAAGTCTCCAACGATGGCTCTCACGTGCTACTCACCAGCCCATTTCC GTCAAGTTCTGGTCTTCTCATGTACAAACACCCTTTCAAATTTCCGAGCTTCAGTCCTGCCAAAGCGACATCGTTTTCCACTGAGTTCTCGTTCTCCATT TCCGGTAAAGGCAATGGTCTTTCTCTTTTAATGGGGTCTCGTAATTTTGCATTAAGAGTTCTGGGTCAGGGTAAATCTGGGTTCTTGAGTGAGAAAAGTT ATCTGGGTGTTGAAATTGGCTCTTTAAGTGATAGTAATGTGGGTGATTTCAACGCAAGTCTTGTAGCTGTAGGTGTTAGCAATGCATCATCATCTGTGCA TTTAGAGACAAATACTGGGGAGAAGTTGAAATCTTGGGTCGATTATAAGGTGTCTTTGAAAAGATTAGAAGTTAGGTTAAGTAAAGTGGGTGATGAAAGG CCACACAATCCAACTATTGCATATTCAATTGATTTATCAAAAACGTGGGGAGATAATGAGGTTTATGTGGCCTTACAGTCATTTAATGGGAAATCTTTAG AGACTTGTATTGTGTACTCATGGAGGTTTAGATTAAGAAAGGTGCCTAATCGGATGCATTCATTGCCAGCCGATCCACATGGTTATGTGGATGAGCCTAA TGAGGAATTAAGAGTGCATAAGAGGAGGTTTTGTCCCTTATCAGTTCTTGCTGGGATAATTTTTGTGACTGGGTGCGGAGCGATGTTGGCATTTGCGGTT CTGTTTGTTTGGGCAGTTTTTGTGAACAGGCACACAGTTTTTCCAACAAAGGGTAATGTGAAGCCAGTTGATTTCAAGTATGAGAAAATCAGTGTAGTTG TGGAGAAAGATGGGGAAGTTGTTAAGAGTTGA
AA sequence Show only first row Show all	>Potri.010G194700.1 pacid=42798512 polypeptide=Potri.010G194700.1.p locus=Potri.010G194700 ID=Potri.010G194700.1.v4.1 annot-version=v4.1 MATFPISRSTLPFNLLVLVLHLLCPISTFSLVTLTSKNPNFDPQITLLGDAKVSNDGSHVLLTSPFPSSSGLLMYKHPFKFPSFSPAKATSFSTEFSFSI SGKGNGLSLLMGSRNFALRVLGQGKSGFLSEKSYLGVEIGSLSDSNVGDFNASLVAVGVSNASSSVHLETNTGEKLKSWVDYKVSLKRLEVRLSKVGDER PHNPTIAYSIDLSKTWGDNEVYVALQSFNGKSLETCIVYSWRFRLRKVPNRMHSLPADPHGYVDEPNEELRVHKRRFCPLSVLAGIIFVTGCGAMLAFAV LFVWAVFVNRHTVFPTKGNVKPVDFKYEKISVVVEKDGEVVKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01090			Concanavalin A-like lectin fam...		Potri.010G194700 [exp]	0	1
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Potri.001G240900 [exp]	2.44	0.8914	Pt-EXPA6.2
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Potri.004G153900 [exp]	4.00	0.8409	CAP1.1
AT1G71970			unknown protein		Potri.013G111700 [exp]	6.92	0.8127
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Potri.016G139600 [exp]	12.00	0.8336	PAA1.4
AT3G51990			Protein kinase superfamily pro...		Potri.009G055200 [exp]	12.40	0.7421
AT3G07190			B-cell receptor-associated pro...		Potri.002G245300 [exp]	16.00	0.7910
AT5G45750		AtRABA1c	RAB GTPase homolog A1C (.1)		Potri.011G070300 [exp]	20.19	0.8227
AT3G27230			S-adenosyl-L-methionine-depend...		Potri.005G236600 [exp]	20.49	0.7911	Pt-RAD3.1
AT5G26960			Galactose oxidase/kelch repeat...		Potri.001G271900 [exp]	21.44	0.7280
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Potri.014G109100 [exp]	29.98	0.7734

Compare expression of checked genes

Potri.010G194700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.