Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05830 206 / 1e-67 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G37950 141 / 3e-42 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G01070 140 / 5e-42 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G59000 127 / 1e-36 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G34200 74 / 5e-16 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G60580 66 / 8e-13 RING/U-box superfamily protein (.1.2.3.4) AT2G45530 59 / 1e-10 RING/U-box superfamily protein (.1) AT5G03180 55 / 5e-09 RING/U-box superfamily protein (.1.2) AT5G08750 55 / 8e-09 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) AT3G09760 54 / 1e-08 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G062600 [exp] 254 / 8e-87 AT5G05830 211 / 7e-70 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G094000 [exp] 208 / 3e-68 AT5G05830 192 / 8e-62 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.016G105900 [exp] 206 / 2e-67 AT5G05830 191 / 2e-61 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.009G039700 [exp] 160 / 5e-50 AT5G05830 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.001G246700 [exp] 153 / 3e-47 AT5G59000 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.004G059200 [exp] 99 / 2e-24 AT5G05830 107 / 3e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.011G068800 [exp] 90 / 3e-21 AT5G05830 91 / 4e-21 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G024000 [exp] 67 / 6e-13 AT5G60580 361 / 4e-120 RING/U-box superfamily protein (.1.2.3.4) Potri.016G022900 [exp] 66 / 9e-13 AT5G60580 337 / 7e-111 RING/U-box superfamily protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040240 [exp] 187 / 3e-60 AT5G05830 187 / 4e-60 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10028249 [exp] 185 / 3e-59 AT5G05830 184 / 8e-59 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017197 [exp] 181 / 2e-57 AT5G05830 182 / 1e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10021113 [exp] 173 / 4e-55 AT5G05830 167 / 7e-53 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10027744 [exp] 154 / 5e-47 AT5G05830 162 / 8e-50 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10035549 [exp] 152 / 3e-46 AT5G05830 157 / 4e-48 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10016451 [exp] 149 / 3e-45 AT5G05830 164 / 1e-51 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10040716 [exp] 144 / 1e-43 AT5G05830 159 / 1e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10015273 [exp] 112 / 5e-30 AT2G34200 106 / 3e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10007293 [exp] 99 / 2e-25 AT2G34200 103 / 6e-27 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF12906 [poplar] [flax] RINGv RING-variant domain
Representative CDS sequence Show only first row Show all	>Potri.010G195100.1 pacid=42799803 polypeptide=Potri.010G195100.1.p locus=Potri.010G195100 ID=Potri.010G195100.1.v4.1 annot-version=v4.1 ATGGAAACTTTACAAAAACCCCAGGTTGTTGTTGATGATGTTGATGTTCTAGATGAAAGTAGTCACCACCACCACCAGCAGTCAGACGATGAAGGGCAAA GAAGGTCTTCAAGCCAGTCTGGTTCTTGCAGTGAGATTGTGAAGGAGAGGGGATCTTCTGTGTCAGAGGTGGATCTGGAGTATGGGGCACCAGAGATAAA GTTACATTTGGCTAAAGTTGAGAGGGACTGCAGGATTTGTCATTTGAGCTTGGATGCAGGGAGTCTGGAGGGTGGATTGCCTATTGAACTGGGTTGTTCT TGCAAGAATGATTTGGCTGCTGCTCATAAGCAATGTGCAGAGGCTTGGTTCAAAATTAAGGGAAACAAAACCTGTGAGATTTGTGGATCAATTGCACGAA ATGTTGCTGGTGCAAATGAAACTGGGTCGGCAGAGCAGTGGAACCAGGCCAGTGATGTTGCCGTGACAGCAGCACCACCCGTGCAACCCGCTGATACACG GAACTTCTGGCAGGGCCACCGGTTCTTGAATTTCCTCCTAGCATGTATGGTCTTTGCCTTTGTTATCTCCTGGCTGTTTCACTTCAATGTACCCTCTTAA
AA sequence Show only first row Show all	>Potri.010G195100.1 pacid=42799803 polypeptide=Potri.010G195100.1.p locus=Potri.010G195100 ID=Potri.010G195100.1.v4.1 annot-version=v4.1 METLQKPQVVVDDVDVLDESSHHHHQQSDDEGQRRSSSQSGSCSEIVKERGSSVSEVDLEYGAPEIKLHLAKVERDCRICHLSLDAGSLEGGLPIELGCS CKNDLAAAHKQCAEAWFKIKGNKTCEICGSIARNVAGANETGSAEQWNQASDVAVTAAPPVQPADTRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.010G195100 [exp]	0	1
AT5G46700		TRN2, TET1	TORNADO 2, TETRASPANIN 1, Tetr...		Potri.001G141400 [exp]	1.41	0.8756
AT3G56810			unknown protein		Potri.016G024600 [exp]	1.73	0.8432
AT1G71310		RAD52-1B.2, RAD...	radiation sensitive 51-1, coba...		Potri.019G068500 [exp]	3.31	0.8163
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.009G039700 [exp]	3.46	0.8330
AT1G75060			unknown protein		Potri.002G133500 [exp]	3.87	0.8254
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Potri.016G129700 [exp]	8.30	0.7539
AT5G41050			Pollen Ole e 1 allergen and ex...		Potri.017G068400 [exp]	8.36	0.8110
AT1G23220			Dynein light chain type 1 fami...		Potri.008G133000 [exp]	8.83	0.8138
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Potri.001G094700 [exp]	11.22	0.7998
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Potri.015G061400 [exp]	13.67	0.8003

Compare expression of checked genes

Potri.010G195100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.