Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05840 600 / 0 Protein of unknown function (DUF620) (.1) AT3G55720 469 / 4e-164 Protein of unknown function (DUF620) (.1) AT5G66740 427 / 6e-149 Protein of unknown function (DUF620) (.1) AT1G75160 396 / 3e-136 Protein of unknown function (DUF620) (.1) AT1G49840 380 / 2e-128 Protein of unknown function (DUF620) (.1) AT3G19540 373 / 5e-126 Protein of unknown function (DUF620) (.1) AT1G27690 350 / 8e-118 Protein of unknown function (DUF620) (.1) AT1G79420 312 / 4e-103 Protein of unknown function (DUF620) (.1) AT5G06610 270 / 2e-87 Protein of unknown function (DUF620) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G062500 [exp] 797 / 0 AT5G05840 614 / 0.0 Protein of unknown function (DUF620) (.1) Potri.002G262400 [exp] 460 / 8e-162 AT1G75160 541 / 0.0 Protein of unknown function (DUF620) (.1) Potri.014G181500 [exp] 451 / 5e-158 AT1G75160 533 / 0.0 Protein of unknown function (DUF620) (.1) Potri.007G027800 [exp] 422 / 1e-146 AT5G66740 645 / 0.0 Protein of unknown function (DUF620) (.1) Potri.001G297500 [exp] 387 / 2e-131 AT3G19540 665 / 0.0 Protein of unknown function (DUF620) (.1) Potri.014G019900 [exp] 384 / 2e-130 AT3G19540 583 / 0.0 Protein of unknown function (DUF620) (.1) Potri.009G092400 [exp] 375 / 9e-127 AT3G19540 644 / 0.0 Protein of unknown function (DUF620) (.1) Potri.008G081700 [exp] 343 / 1e-115 AT1G79420 522 / 0.0 Protein of unknown function (DUF620) (.1) Potri.010G174200 [exp] 342 / 5e-115 AT1G79420 524 / 0.0 Protein of unknown function (DUF620) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004669 [exp] 642 / 0 AT5G05840 558 / 0.0 Protein of unknown function (DUF620) (.1) Lus10040241 [exp] 628 / 0 AT5G05840 551 / 0.0 Protein of unknown function (DUF620) (.1) Lus10026031 [exp] 417 / 8e-145 AT5G66740 643 / 0.0 Protein of unknown function (DUF620) (.1) Lus10014323 [exp] 425 / 4e-141 AT5G66740 650 / 0.0 Protein of unknown function (DUF620) (.1) Lus10010811 [exp] 390 / 6e-134 AT1G75160 484 / 9e-172 Protein of unknown function (DUF620) (.1) Lus10007157 [exp] 380 / 3e-130 AT1G75160 477 / 6e-169 Protein of unknown function (DUF620) (.1) Lus10024790 [exp] 383 / 8e-130 AT3G19540 630 / 0.0 Protein of unknown function (DUF620) (.1) Lus10013891 [exp] 372 / 1e-125 AT3G19540 674 / 0.0 Protein of unknown function (DUF620) (.1) Lus10018707 [exp] 333 / 2e-110 AT3G19540 566 / 0.0 Protein of unknown function (DUF620) (.1) Lus10026605 [exp] 282 / 2e-93 AT3G19540 405 / 2e-141 Protein of unknown function (DUF620) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04788 [poplar] [flax] DUF620 Protein of unknown function (DUF620)
Representative CDS sequence Show only first row Show all	>Potri.010G195200.1 pacid=42799094 polypeptide=Potri.010G195200.1.p locus=Potri.010G195200 ID=Potri.010G195200.1.v4.1 annot-version=v4.1 ATGAGGAAGCTTTGTCCAAATTTTGATCGTGAAGATGGGCTCGACACTGTTCTCGAGGTTCCAATCCCTGAAGAAATGTTTGCTTCTAACAAGCATGGTA ATAGGTCATGGCAAAACATGAAAGCCTGGATGAGACCACACAACGAAAGGTCCATGACAACTCGTTTTGGAGGCAAAAACACTGAGATTCAATTCTTGCT TGGTGTTGTTGGTGCTCCATTGATCCCACTTCCCATCCTCTGTGATCACCAGTTCATCAACCGTAACATCAAAGACCACCCTATTGAGTCATCAATGGCA AAATACATAGTGCAACAATACATAGCAGCAGTGGGAGGAGAGAGAGCTCTGAATTCAGTGGACAGTATGTATGCAATGGGGAAAGTGAAAATGGTAGCAT CAGAATTTTGTGCAGGCGAAGGGAGTTTGAACAACAATAAGACGCTGAAAGTGAAGAATCAGAAACATGGAGGTGGAGAAATGGGAGGGTTTGTTCTATG GAAGAAAAGACCTGATTTATGGTGCTTGGAATTAATGGTTTCTGGGTGCAAAATTAGTGCCGGCAGCGATGGTAAGGTGGCTTGGAGACAAACCCCATGG CACCACTCTCATGCATCTAGAGGCCCACCTAGGCCTCTCAGACGTTTTCTCCAGGGTCTTGATCCAAAATCTACGGCCAACTTATTCTCCAATTCTGTTT GCACTGGCGAGAAAACAATCAACAATGAGGATTGTTTCGTGCTAAAACTTGAAGCTGACCCCTCGTCGCTAAGAGCAAGGAGCACTAGCAATGTAGAAAT AATTAGGCACACAGTATGGGGCTATTTCAGCCAAAGAACAGGTTTGTTGGTTCAATTAGAAGACTCTCACCTTCTAAGAATTAAAGCCCCAGGCAATGAC AGCATTTTTTGGGAGACCACAATGGAGTCATCAATTCAAGACTACCGAACCATAGATGGGATTAACATAGCATACAAGGGTAGAACTTCGGTCTCGTTGT TCAGGTTCGGTGAGACCTCAGAAAGCCATTCAAGGACAAGAATGGAGGAGATTTGGGCTATTGAAGAGGTTGATTTTAACATAAAAGGATTGTCCATGGA TTGCTTTTTGCCACCTAGTGATTTGAAGAAAGAAGAAGAAGTGTGTGATAATGTTGCGATTAGCAACAGTGCAAGATTACCTTTCAAGTTTCGATCAGCT TCTTCTAGGATTTGTGTATCTAAGGTTGTAGCTATCGATGATGTTGATGACTCGGATGAAATTTACGATGAAGACGAGGATCGCGAATAG
AA sequence Show only first row Show all	>Potri.010G195200.1 pacid=42799094 polypeptide=Potri.010G195200.1.p locus=Potri.010G195200 ID=Potri.010G195200.1.v4.1 annot-version=v4.1 MRKLCPNFDREDGLDTVLEVPIPEEMFASNKHGNRSWQNMKAWMRPHNERSMTTRFGGKNTEIQFLLGVVGAPLIPLPILCDHQFINRNIKDHPIESSMA KYIVQQYIAAVGGERALNSVDSMYAMGKVKMVASEFCAGEGSLNNNKTLKVKNQKHGGGEMGGFVLWKKRPDLWCLELMVSGCKISAGSDGKVAWRQTPW HHSHASRGPPRPLRRFLQGLDPKSTANLFSNSVCTGEKTINNEDCFVLKLEADPSSLRARSTSNVEIIRHTVWGYFSQRTGLLVQLEDSHLLRIKAPGND SIFWETTMESSIQDYRTIDGINIAYKGRTSVSLFRFGETSESHSRTRMEEIWAIEEVDFNIKGLSMDCFLPPSDLKKEEEVCDNVAISNSARLPFKFRSA SSRICVSKVVAIDDVDDSDEIYDEDEDRE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05840			Protein of unknown function (D...		Potri.010G195200 [exp]	0	1
AT1G27100			Actin cross-linking protein (....		Potri.017G075900 [exp]	9.48	0.9906
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Potri.008G175000 [exp]	11.18	0.9843
AT1G20560		AAE1	acyl activating enzyme 1 (.1.2...		Potri.007G059401 [exp]	11.74	0.9870
AT4G14746			unknown protein		Potri.013G039300 [exp]	14.21	0.9890	Pt-MTN26.2
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G222800 [exp]	15.29	0.9874
AT1G25340	MYB	ATMYB116	myb domain protein 116 (.1.2)		Potri.015G046200 [exp]	17.20	0.9720
AT3G12910	NAC		NAC (No Apical Meristem) domai...		Potri.005G098000 [exp]	21.54	0.9873	NAC077
AT1G58420			Uncharacterised conserved prot...		Potri.014G014500 [exp]	21.90	0.9703
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.001G451100 [exp]	28.46	0.9702	Pt-RCOMT1.5
AT3G60120		BGLU27	beta glucosidase 27 (.1)		Potri.001G224000 [exp]	28.49	0.9869

Compare expression of checked genes

Potri.010G195200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.