Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11340 485 / 6e-170 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT3G55700 475 / 6e-166 UDP-Glycosyltransferase superfamily protein (.1) AT5G05880 464 / 1e-161 UDP-Glycosyltransferase superfamily protein (.1) AT5G05860 449 / 5e-156 UGT76C2 UDP-glucosyl transferase 76C2 (.1) AT3G55710 448 / 3e-155 UDP-Glycosyltransferase superfamily protein (.1) AT5G05890 444 / 6e-154 UDP-Glycosyltransferase superfamily protein (.1) AT5G05870 443 / 3e-153 UGT76C1 UDP-glucosyl transferase 76C1 (.1) AT5G05900 425 / 3e-146 UDP-Glycosyltransferase superfamily protein (.1) AT3G46670 380 / 6e-129 UGT76E11 UDP-glucosyl transferase 76E11 (.1) AT5G59590 375 / 9e-127 UGT76E2 UDP-glucosyl transferase 76E2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G195500 [exp] 911 / 0 AT3G11340 483 / 3e-169 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Potri.010G195600 [exp] 587 / 0 AT3G55700 515 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G245900 [exp] 432 / 6e-149 AT3G46660 452 / 7e-157 UDP-glucosyl transferase 76E12 (.1) Potri.006G039300 [exp] 393 / 4e-133 AT5G59590 347 / 2e-115 UDP-glucosyl transferase 76E2 (.1) Potri.001G313000 [exp] 318 / 4e-104 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052300 [exp] 303 / 3e-98 AT1G22360 603 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.009G039100 [exp] 310 / 4e-97 AT3G09360 412 / 7e-134 Cyclin/Brf1-like TBP-binding protein (.1) Potri.007G095000 [exp] 300 / 4e-97 AT1G22340 543 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.017G052166 [exp] 298 / 3e-96 AT1G22360 607 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040246 [exp] 552 / 0 AT3G11340 488 / 3e-171 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10004671 [exp] 538 / 0 AT3G55700 450 / 4e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10037268 [exp] 495 / 3e-173 AT3G11340 447 / 1e-154 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10004672 [exp] 475 / 3e-165 AT3G11340 417 / 1e-142 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10040725 [exp] 411 / 9e-141 AT5G59590 408 / 9e-140 UDP-glucosyl transferase 76E2 (.1) Lus10016460 [exp] 410 / 2e-140 AT5G59590 400 / 2e-136 UDP-glucosyl transferase 76E2 (.1) Lus10016461 [exp] 395 / 1e-134 AT3G11340 381 / 3e-129 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10016459 [exp] 368 / 1e-123 AT5G59590 357 / 3e-119 UDP-glucosyl transferase 76E2 (.1) Lus10024584 [exp] 293 / 4e-94 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10025741 [exp] 288 / 4e-92 AT1G22380 525 / 0.0 UDP-glucosyl transferase 85A3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.010G195300.1 pacid=42799850 polypeptide=Potri.010G195300.1.p locus=Potri.010G195300 ID=Potri.010G195300.1.v4.1 annot-version=v4.1 ATGGAGAATATAAGAGAGTCCCATGTGCAGCATAGGAAGTGTCGGCGAATTATACTCTTCCCACCGCCTTTGGAAGGGCATATCAATCCTATGATTCAGC TTGCTAATATCCTTTATTCTAAAGGATTTTCCATAACAATCATCCACACTCAATTCAATGCTCCCAATCCTTCAAAGTGTCCTCACTTCACTTTCCATGC AATTCCTGATGGCTTGTTGGAAGATGAGGCTTCAACTGCAGATGGTGTAATCCGTTTCTCAGTCCTCAATTCAAAGTGTGTTGAGCCCTTTCGAGATTGC CTGGCTAAGCTGTTATTGGATGCCGTGGATCAAGAGCCCGTTGCTTGCTTGATCACAGATGCTGTTTGGCACTTCACTCACGCTGTAGCCGAGGGCTTTA AGATTCCAACTATTGCCATGCGGACAACTAGTATCAGTTCTTTTCTTGCTTTTGACTCCTTCCCCCTTCTGCTAGAAAGGGGTTACTTCCCAATTCAAGA TTCTCGATTAGAAGAATCAGTGCAAGAGCTTCCACCGTTGAAAGTCAAAGATCTTCCTGTGATCAAAACACGATTTCCAGCGACTCTTCATCAACAGTTT GAAAAGATAAGTAATCAAGCAAAAGCCTGTTCAGGCCTAATTTGGAACTCGTTTGAAGAAATTGAGCGTGATGCTCTGAGCAAATTAAGCCAGGTCTTTA CTGTGCCAATATTTCACATAGGTCCATTTCACAAGTACTTTCCAGCTTCAAGTAGCTTAATAACACCAGACCAAAGCTGCATTTCCTGGCTTGATACCCA GACTCCTAATTCTGTACTCTATGTCAGCTTCGGGAGCCTTGCTGCGGTAAATGAGACTGAATTTCTGGAGATGGCCTGGGGGCTACTCCATAGCAATCAA CCCTTCTTGTGGGTGGTTCGACCTGGATTAGTTCGGGGATCGGAATCGTCCGAATCCTTGCCGGATGGATTCCTTGAGATGGTGGGTAAAAGGGGCTATA TCGTGAAATGGGCTCCTCAACAACAGGTGCTAGCACACCCTGCCACTGGAGGGTTTTGGACACACAATGGTTGGAATTCCACATTGGAAAGTATATGTGA AGGGGTTCCCATGATTTGTCAGCCTTTTTCTGGTGATCAAAGAGTAAATGCTAGGTATGTCAGTGATGTTTGGAAAATTGGGATACACTTGGAGTATAAT AAACTCGAGAGAAGGGAGATAGAGAGGGCAATTAAAGGACTAATGGTAGAGACAAAAGGGCAGGGGATGAGACAGAGAATTGTGTCTTTGAAAGAGAAGG TGAACCTTTGTGTAAGCCATGGAGGCTCTTCTTACCATTCACTTGAGAACTTGACTAAGTACATCATGTCATTCTAG
AA sequence Show only first row Show all	>Potri.010G195300.1 pacid=42799850 polypeptide=Potri.010G195300.1.p locus=Potri.010G195300 ID=Potri.010G195300.1.v4.1 annot-version=v4.1 MENIRESHVQHRKCRRIILFPPPLEGHINPMIQLANILYSKGFSITIIHTQFNAPNPSKCPHFTFHAIPDGLLEDEASTADGVIRFSVLNSKCVEPFRDC LAKLLLDAVDQEPVACLITDAVWHFTHAVAEGFKIPTIAMRTTSISSFLAFDSFPLLLERGYFPIQDSRLEESVQELPPLKVKDLPVIKTRFPATLHQQF EKISNQAKACSGLIWNSFEEIERDALSKLSQVFTVPIFHIGPFHKYFPASSSLITPDQSCISWLDTQTPNSVLYVSFGSLAAVNETEFLEMAWGLLHSNQ PFLWVVRPGLVRGSESSESLPDGFLEMVGKRGYIVKWAPQQQVLAHPATGGFWTHNGWNSTLESICEGVPMICQPFSGDQRVNARYVSDVWKIGIHLEYN KLERREIERAIKGLMVETKGQGMRQRIVSLKEKVNLCVSHGGSSYHSLENLTKYIMSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Potri.010G195300 [exp]	0	1
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Potri.010G195500 [exp]	1.00	0.9501
AT3G51370			Protein phosphatase 2C family ...		Potri.007G061100 [exp]	4.69	0.8492
AT2G19080			metaxin-related (.1)		Potri.018G147625 [exp]	8.66	0.8202
AT2G20930			SNARE-like superfamily protein...		Potri.004G176500 [exp]	8.94	0.8082
AT2G22400			S-adenosyl-L-methionine-depend...		Potri.016G098850 [exp]	12.00	0.7620
AT2G20142			Toll-Interleukin-Resistance (T...		Potri.018G023600 [exp]	12.48	0.7770
AT1G66920			Protein kinase superfamily pro...		Potri.015G018600 [exp]	12.48	0.8252
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G050240 [exp]	13.41	0.8235
					Potri.001G265000 [exp]	15.49	0.7828
AT2G38730			Cyclophilin-like peptidyl-prol...		Potri.003G194500 [exp]	17.74	0.8112

Compare expression of checked genes

Potri.010G195300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.