Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55700 515 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT3G11340 480 / 6e-168 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT3G55710 481 / 8e-168 UDP-Glycosyltransferase superfamily protein (.1) AT5G05880 460 / 7e-160 UDP-Glycosyltransferase superfamily protein (.1) AT5G05860 446 / 1e-154 UGT76C2 UDP-glucosyl transferase 76C2 (.1) AT5G05890 434 / 7e-150 UDP-Glycosyltransferase superfamily protein (.1) AT5G05870 427 / 5e-147 UGT76C1 UDP-glucosyl transferase 76C1 (.1) AT5G05900 426 / 2e-146 UDP-Glycosyltransferase superfamily protein (.1) AT3G46670 371 / 4e-125 UGT76E11 UDP-glucosyl transferase 76E11 (.1) AT5G59590 363 / 7e-122 UGT76E2 UDP-glucosyl transferase 76E2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G195500 [exp] 566 / 0 AT3G11340 483 / 3e-169 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Potri.010G195300 [exp] 565 / 0 AT3G11340 485 / 6e-170 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Potri.001G245900 [exp] 418 / 2e-143 AT3G46660 452 / 7e-157 UDP-glucosyl transferase 76E12 (.1) Potri.006G039300 [exp] 397 / 9e-135 AT5G59590 347 / 2e-115 UDP-glucosyl transferase 76E2 (.1) Potri.007G095000 [exp] 301 / 3e-97 AT1G22340 543 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.001G313000 [exp] 296 / 1e-95 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.002G098400 [exp] 291 / 2e-93 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.009G039100 [exp] 292 / 6e-90 AT3G09360 412 / 7e-134 Cyclin/Brf1-like TBP-binding protein (.1) Potri.005G073766 [exp] 281 / 1e-89 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040246 [exp] 532 / 0 AT3G11340 488 / 3e-171 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10004671 [exp] 523 / 0 AT3G55700 450 / 4e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10037268 [exp] 486 / 2e-169 AT3G11340 447 / 1e-154 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10004672 [exp] 473 / 5e-164 AT3G11340 417 / 1e-142 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10040725 [exp] 404 / 1e-137 AT5G59590 408 / 9e-140 UDP-glucosyl transferase 76E2 (.1) Lus10016460 [exp] 403 / 2e-137 AT5G59590 400 / 2e-136 UDP-glucosyl transferase 76E2 (.1) Lus10016461 [exp] 368 / 1e-123 AT3G11340 381 / 3e-129 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10016459 [exp] 365 / 2e-122 AT5G59590 357 / 3e-119 UDP-glucosyl transferase 76E2 (.1) Lus10032220 [exp] 285 / 9e-91 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10024584 [exp] 281 / 9e-90 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.010G195600.1 pacid=42798943 polypeptide=Potri.010G195600.1.p locus=Potri.010G195600 ID=Potri.010G195600.1.v4.1 annot-version=v4.1 ATGAAGAACTCAGGCACCGACATCCAAGTTGATCAAAGAAATGGCCGCAGATTGGTTCTTTTCCCATTACCACTACAAGGCCACGTTAACCCCATGATTC AACTTGCTAACATTCTCCACTCCAAAGGCTTCTCTATTACTATAATCCACACAACCTTCAACTCTCCAGATCCTTCGAAGTATCCTCACTTCACCTTCCA TTCCATTCAAGAAGAGTTAACTGAAACTGAAGCCTCAACCGCAGATATAATAGCTCTAGTTTCATCTCTTAACATCAAATGCGTTGCCCCTTTTAGAGAT TGCGTGTCCAGGTTGCTATCTGATGTTTCAGAGGACCCTATTGCTTGCTTGATCTCAGATGCCATCTTCCACTTCACAACTGCAGTTTCCAAAGGTCTTA AACTTCCAAGGATAGTTTTAAGGACCGGTGGTGCTTCCTCTTTTCGTATTTTTACTGCCTTACCATTTCTGAAAGAAAAGGGGTATCTTCCAATACAAGA ATCTCAGTTGGAAGATCCAATGGTAGAGCTTCCACCACTTAAAGTCAAAGACCTTCCAGTGATCAACTCGCGTGACCCAGAATCTGTATACGATTTGATA GTTAGCATGACAAATGGAACTAAGGCATCTTCGGGAGTCATTTGGAACACGTTCGAAGAGCTTGAACAGTCTGCCTTAGCTGCATTGCGCCATGAATTTT CCATTCCAATCTTTCCAATTGGCCCATTTCACAACCGCTTCCCATCCTCTTCAAGTAGTCTGCTTACACAAGATCAAAGCTCGATTTCCTGGCTAGACAA ACAAGCACCGAAATCTGTAGTTTATGTGAGTTTTGGGAGTGTTGCTGCATTAAATGAAACCGAGTTCTTGGAGGTGGCCTGGGGTTTAGCCAACAGCAAG CAGCCCTTCTTGTGGGTGGTAAGACCTGGATTAGTCCGTGGCGCGGAATGGCTCGAGCCACTGCCTAATGGGTTCCTTGAGGATTTGAATGGAAGAGCGC ACATTGTAAAATGGGCTCCACAATCAGAAGTGCTAGCTCATCCTGCCGTTGGTGCATTTTGGACTCACAACGGGTGGAATTCGACATTGGAGAGTATTTG TGAAGGGGTTCCTATGATATGTATGCCTTGTTTCACTGACCAAATGGCTAACGCGAGATATGTAAGTGATGTGTGGAGAGTTGGGATGCAACTAGAGAAT GGGTTAGAGAGAGCGAAGATCGAAAGCACCATCAACCGGTTATTAGTGGATGAAGAAGGTGAAGCTATTAGAAAAGGGATTTTGAGTTTGAAGGAGAAGG CAAAACTTTGTCTCAGCCAAGGAGGCTCTTCATGCCAATCACTGGATAGCTTGGTTAGCCATATTTTATCATTAGAGCCCATTATTTTCCAGACTCAATA A
AA sequence Show only first row Show all	>Potri.010G195600.1 pacid=42798943 polypeptide=Potri.010G195600.1.p locus=Potri.010G195600 ID=Potri.010G195600.1.v4.1 annot-version=v4.1 MKNSGTDIQVDQRNGRRLVLFPLPLQGHVNPMIQLANILHSKGFSITIIHTTFNSPDPSKYPHFTFHSIQEELTETEASTADIIALVSSLNIKCVAPFRD CVSRLLSDVSEDPIACLISDAIFHFTTAVSKGLKLPRIVLRTGGASSFRIFTALPFLKEKGYLPIQESQLEDPMVELPPLKVKDLPVINSRDPESVYDLI VSMTNGTKASSGVIWNTFEELEQSALAALRHEFSIPIFPIGPFHNRFPSSSSSLLTQDQSSISWLDKQAPKSVVYVSFGSVAALNETEFLEVAWGLANSK QPFLWVVRPGLVRGAEWLEPLPNGFLEDLNGRAHIVKWAPQSEVLAHPAVGAFWTHNGWNSTLESICEGVPMICMPCFTDQMANARYVSDVWRVGMQLEN GLERAKIESTINRLLVDEEGEAIRKGILSLKEKAKLCLSQGGSSCQSLDSLVSHILSLEPIIFQTQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55700			UDP-Glycosyltransferase superf...		Potri.010G195600 [exp]	0	1
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Potri.017G013400 [exp]	1.00	0.8424
AT5G59845			Gibberellin-regulated family p...		Potri.014G020100 [exp]	3.16	0.8416
AT4G24250		ATMLO13, MLO13	MILDEW RESISTANCE LOCUS O 13, ...		Potri.003G151750 [exp]	6.00	0.8073
AT5G59480			Haloacid dehalogenase-like hyd...		Potri.001G242300 [exp]	16.49	0.7551
ATMG00810		ATMG00810.1, OR...	DNA/RNA polymerases superfamil...		Potri.013G138801 [exp]	21.23	0.7523
AT3G50120			Plant protein of unknown funct...		Potri.006G042946 [exp]	24.97	0.7637
AT1G48560			unknown protein		Potri.003G188600 [exp]	27.92	0.7414
					Potri.014G094600 [exp]	31.43	0.6971
AT2G27770			Plant protein of unknown funct...		Potri.017G116200 [exp]	33.24	0.8106
					Potri.001G280604 [exp]	34.08	0.8033

Compare expression of checked genes

Potri.010G195600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.