Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05950 181 / 2e-58 MEE60 maternal effect embryo arrest 60 (.1) AT3G46890 103 / 5e-28 unknown protein AT3G07510 101 / 3e-27 unknown protein AT2G01580 99 / 3e-26 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G038500 [exp] 150 / 2e-46 AT5G05950 150 / 2e-46 maternal effect embryo arrest 60 (.1) Potri.002G239500 [exp] 105 / 8e-29 AT3G07510 202 / 8e-67 unknown protein Potri.014G176000 [exp] 104 / 2e-28 AT3G07510 207 / 2e-68 unknown protein Potri.014G176300 [exp] 83 / 4e-20 AT3G07510 144 / 1e-43 unknown protein Potri.014G176400 [exp] 63 / 2e-12 AT3G07510 122 / 1e-34 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009873 [exp] 177 / 4e-57 AT5G05950 201 / 2e-66 maternal effect embryo arrest 60 (.1) Lus10000398 [exp] 130 / 4e-39 AT5G05950 130 / 2e-39 maternal effect embryo arrest 60 (.1) Lus10016474 [exp] 127 / 3e-37 AT5G05950 183 / 3e-59 maternal effect embryo arrest 60 (.1) Lus10040757 [exp] 121 / 5e-32 AT5G59070 597 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10025856 [exp] 101 / 3e-27 AT3G07510 244 / 3e-83 unknown protein Lus10038243 [exp] 102 / 4e-27 AT3G07510 243 / 2e-82 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G196100.1 pacid=42799247 polypeptide=Potri.010G196100.1.p locus=Potri.010G196100 ID=Potri.010G196100.1.v4.1 annot-version=v4.1 ATGACAACCAGCATCCATATCACCGCCTTAGACGGGATCGTAAATGTGAACTCCCTCTTCACACTAGCCGTCTTCATTGGCCTAGCTTGGAACCCAACTG ATCCCACCAACACTCTTATTGGCCCCAATGACCCCATCTCCTGCTCTCCAAGCCCCAAAATCGCTGAAGATTTGATCGCCTTCCACGTGTACTCATTCAG CTCCTTTCTCTTCTCTAGCCTGATCGCTCTCGCTCTTAAACAAGCTATCAGGGTCGCTAAAACTTCAAATCACACTCATGGAAATTATTTGGAGGCGGCC GAGCTTATGTTAGCGCACGTGAATAAGAATTTGATTCGGGTTGGGATGTTGGTTTCTGGTATTGGGTCGGTTTGTGGATGCGTGTTCTTGATGCTGGCGC TTGTTAATGTTGTTCAGTTAAAGCTTGGGAGTTTGGGTTGTGGAAACGGACATATTTATGCTGCTGTTGTTCCGCTTGTTATTTTGGTTCCTGTTGCTCT TTTGGTTTATGTTTCAATTGTTTTGTACGCTTTTACTCGCTAG
AA sequence Show only first row Show all	>Potri.010G196100.1 pacid=42799247 polypeptide=Potri.010G196100.1.p locus=Potri.010G196100 ID=Potri.010G196100.1.v4.1 annot-version=v4.1 MTTSIHITALDGIVNVNSLFTLAVFIGLAWNPTDPTNTLIGPNDPISCSPSPKIAEDLIAFHVYSFSSFLFSSLIALALKQAIRVAKTSNHTHGNYLEAA ELMLAHVNKNLIRVGMLVSGIGSVCGCVFLMLALVNVVQLKLGSLGCGNGHIYAAVVPLVILVPVALLVYVSIVLYAFTR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05950		MEE60	maternal effect embryo arrest ...		Potri.010G196100 [exp]	0	1
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Potri.012G021800 [exp]	7.00	0.6799
AT5G55000		FIP2	potassium channel tetramerisat...		Potri.013G062500 [exp]	11.87	0.6346
AT3G11730		ATFP8, AtRABD1	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.003G004000 [exp]	12.72	0.6454
AT3G02920		ATRPA32B	Replication protein A, subunit...		Potri.018G091700 [exp]	15.19	0.6163
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Potri.012G047200 [exp]	17.66	0.6178	PIN7,Pt-PIN1.2
AT5G46860		SGR3, ATVAM3, A...	SHOOT GRAVITROPISM 3, ARABIDOP...		Potri.014G145200 [exp]	28.46	0.5967
AT3G02540		RAD23C, RAD23-3	RADIATION SENSITIVE23C, PUTATI...		Potri.017G114000 [exp]	30.19	0.5292
AT5G52200		AtI-2	inhibitor-2, phosphoprotein ph...		Potri.015G140500 [exp]	47.40	0.5739
AT4G31600			UDP-N-acetylglucosamine (UAA) ...		Potri.006G270700 [exp]	54.99	0.5703
AT4G27190			NB-ARC domain-containing disea...		Potri.018G145556 [exp]	63.27	0.5870

Compare expression of checked genes

Potri.010G196100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.