Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39855 86 / 4e-22 unknown protein AT5G59080 82 / 1e-20 unknown protein AT3G55646 80 / 1e-19 unknown protein AT5G02020 65 / 9e-14 SIS Salt Induced Serine rich, unknown protein AT5G05965 47 / 4e-07 unknown protein AT3G46880 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G061700 [exp] 193 / 2e-64 AT3G55646 75 / 7e-18 unknown protein Potri.009G038300 [exp] 100 / 3e-27 AT5G59080 104 / 2e-29 unknown protein Potri.006G092400 [exp] 65 / 7e-14 AT5G02020 122 / 2e-36 Salt Induced Serine rich, unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021101 [exp] 54 / 1e-09 AT5G02020 117 / 1e-33 Salt Induced Serine rich, unknown protein Lus10040250 [exp] 50 / 4e-08 AT2G39855 64 / 1e-13 unknown protein Lus10009870 [exp] 45 / 1e-06 AT2G39855 62 / 4e-13 unknown protein Lus10004678 [exp] 45 / 2e-06 AT2G39855 67 / 2e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G196400.3 pacid=42797290 polypeptide=Potri.010G196400.3.p locus=Potri.010G196400 ID=Potri.010G196400.3.v4.1 annot-version=v4.1 ATGGAAAACAAAAGGCAAGTCGTTGCTTCTTCTTTTGATCATCTTTTTGGTCCTAAAGACTCTTCCTCTTCATCATCCGCCTCAAGTGGGATATTCGAGT CCATTTTTCCTCATCCATCAAAGGTGCCAGCTGGGAGGGACTCTGGAGTTATGGAAAGTCATGGTGGCAGGGGAAAATATGCGAATCGAGATAATGTCGC TCAGAAAGCCAAGGGAGAGGGCAGTGGCAAAGGCAAGAGTGTAGTTTTTCAGAATGAAACACCAGAACCATGCTACCTCAGCTCGTCAATCTACTACGGT GGTCAAGAGAACTATTCTCCAAGAACCAAGAACTCAGAATATCAACATGTTTTCAAGAAAGATGATGAACAGGAAAATCCCAATGGCAACGATCCGAACA GTGCTTCAAGGGGGAACTGGTGGCAGGGTTCACTCTATTATTAG
AA sequence Show only first row Show all	>Potri.010G196400.3 pacid=42797290 polypeptide=Potri.010G196400.3.p locus=Potri.010G196400 ID=Potri.010G196400.3.v4.1 annot-version=v4.1 MENKRQVVASSFDHLFGPKDSSSSSSASSGIFESIFPHPSKVPAGRDSGVMESHGGRGKYANRDNVAQKAKGEGSGKGKSVVFQNETPEPCYLSSSIYYG GQENYSPRTKNSEYQHVFKKDDEQENPNGNDPNSASRGNWWQGSLYY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39855			unknown protein		Potri.010G196400 [exp]	0	1
AT1G15670			Galactose oxidase/kelch repeat...		Potri.006G196900 [exp]	6.40	0.8842
					Potri.002G056400 [exp]	18.16	0.8711
AT4G32480			Protein of unknown function (D...		Potri.011G053300 [exp]	19.97	0.8799
					Potri.012G100300 [exp]	21.81	0.8826
AT1G66480		PMI2	plastid movement impaired 2 (....		Potri.017G128800 [exp]	22.04	0.8192
AT1G11080		SCPL31	serine carboxypeptidase-like 3...		Potri.011G046600 [exp]	22.27	0.8667
					Potri.004G202433 [exp]	35.72	0.8433
AT2G17880			Chaperone DnaJ-domain superfam...		Potri.002G020700 [exp]	41.46	0.8131
AT5G26810			Pectin lyase-like superfamily ...		Potri.013G008100 [exp]	43.55	0.8676
AT1G68020		ATTPS6	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.010G104500 [exp]	46.30	0.8396

Compare expression of checked genes

Potri.010G196400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.