Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59100 579 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT4G00230 568 / 0 XSP1 xylem serine peptidase 1 (.1) AT5G59190 555 / 0 subtilase family protein (.1) AT5G59120 551 / 0 ATSBT4.13 subtilase 4.13 (.1) AT3G46850 551 / 0 Subtilase family protein (.1) AT5G59090 551 / 0 ATSBT4.12 subtilase 4.12 (.1.2.3) AT5G58830 546 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G03620 543 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT3G46840 541 / 0 Subtilase family protein (.1) AT5G59130 530 / 1e-180 Subtilase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G196800 [exp] 1224 / 0 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196900 [exp] 821 / 0 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.012G133200 [exp] 655 / 0 AT5G59090 646 / 0.0 subtilase 4.12 (.1.2.3) Potri.003G120101 [exp] 654 / 0 AT5G59190 536 / 0.0 subtilase family protein (.1) Potri.009G038001 [exp] 598 / 0 AT3G46850 794 / 0.0 Subtilase family protein (.1) Potri.009G037900 [exp] 593 / 0 AT5G59100 777 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.002G151900 [exp] 588 / 0 AT4G00230 938 / 0.0 xylem serine peptidase 1 (.1) Potri.006G114500 [exp] 548 / 0 AT5G03620 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G074500 [exp] 513 / 4e-176 AT4G00230 790 / 0.0 xylem serine peptidase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040253 [exp] 855 / 0 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3) Lus10009867 [exp] 854 / 0 AT5G59190 629 / 0.0 subtilase family protein (.1) Lus10004685 [exp] 850 / 0 AT4G00230 647 / 0.0 xylem serine peptidase 1 (.1) Lus10009868 [exp] 817 / 0 AT5G03620 605 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10004683 [exp] 815 / 0 AT5G59190 600 / 0.0 subtilase family protein (.1) Lus10004682 [exp] 688 / 0 AT5G59190 555 / 0.0 subtilase family protein (.1) Lus10000396 [exp] 677 / 0 AT5G59190 477 / 4e-160 subtilase family protein (.1) Lus10004686 [exp] 623 / 0 AT5G59100 611 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10002964 [exp] 592 / 0 AT5G59100 624 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10042555 [exp] 575 / 0 AT5G59100 603 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Potri.010G196700.1 pacid=42797791 polypeptide=Potri.010G196700.1.p locus=Potri.010G196700 ID=Potri.010G196700.1.v4.1 annot-version=v4.1 ATGGCTGGCTTGGACGGTGTAGTGTCTGTGTTTCCTAGTCAGAAGAAAAAACTTCACACGACAAGATCATGGGACTTCATGGGCTTCCCCAAGAATGTTA CAAGAGCAACTTCTGAAAGCGACATCATTGTGGCAATGCTTGACACAGGGATTTGGCCCGAGTCTGAAAGTTTTAATGACGAAGGATATGGTCCGCCTCC AAGCAAATGGAAGGGCACTTGCCAGGCATCCTCCAATTTCACTTGCAACAATAAGATAATTGGAGCTCGATACTACCATAGCGAAGGAAAAGTAGAACCA GGAGACTTTGCCTCCCCAAGAGATTCAGAAGGCCATGGGACTCACACTGCTTCAACAGCAGCAGGAAGATTGGTTAGTGAGGCAAGCCAACTAGGCCTTG CTACAGGAACAGCACGAGGAGGGGTTCCCTCTGCCCGTATTGCTGTGTACAAGATATGTTGGTCTGATGGCTGCTCAGATGCCGACATTCTTGCAGCTTT TGACGATGCTATTGCAGATGGAGTTGATATAATCTCCCTCTCAGTTGGAGGGTGGCCCATGGACTATTTTGAGGATTCAATTGCTATTGGAGCTTTCCAT TCAATGAAAAATGGAATACTCACATCAAACTCTGCTGGTAACTCAGGTCCTGATCCTGAATCAATTTCAAATTGTTCACCTTGGTCTCTGTCTGTGGCTG CTAGCACCATGGATCGAAAGTTTGTGACACCGGTGATGTTAGGCAATGGAGCCATTTATGAGGGAATCTCCATAAATACTTTTGAGCCTGGAAATATTAT GCCCCCTTTCATTTACGGTGGAGATGCTCCAAACAAGACAGCAGGATACAACGGGTCAGAATCCAGGTATTGCCCCCTGGACTCGTTGAACAGCACTGTG GTGGAAGGGAAAGTCGTTCTTTGTGATCAGATCAGTGGAGGGGAGGAGGCAAGAGCCAGTCATGCAGTTGGATCAATAATGAATGGTGACGATTATTCGG ATGTGGCCTTCAGTTTTCCTTTACCAGTTTCGTATTTGAGCTCAAGTGATGGAGCTGATCTTTTGAAGTACTTAAACTCAACTAGTGAACCAACCGCAAC TATAATGAAGAGCATTGAAATAAAGGATGAAACTGCCCCATTTGTGGTTTCGTTTTCTTCACGAGGGCCTAATCCGATAACAAGTGACCTTCTCAAGCCC GACCTGACTGCCCCAGGAGTGCACATTTTGGCAGCATGGTCTGAAGCAACCACTGTAACAGGAAGCCCAGGGGATACAAGAGTGGTTAAATACAACATAA TTTCCGGAACATCTATGTCTTGTCCACATGCATCCGGCGCAGCTGCTTATGTCAAGGCATTTAACCCATCATGGTCTCCTGCTGCCATTAAGTCTGCCCT AATGACAACTGCCTCTTCCATGAGTTCTAGCATTAACAATGATGCGGAGTTCGCTTATGGATCAGGCCATATAAATCCTGCAAAGGCTATTGATCCTGGT CTAGTATATGATGCTGGAGAGATTGATTATGTTAGATTCTTGTGTGGACAAGGATATAATGCTACACAACTTCTACTAATTACCGGAGATAATAGCACAT GTTCTGCAGAAACAAATGGAACTGTGTGGGATCTAAACTACCCATCTTTCGCTCTGTCTGCCAAATCCGGGAAAACTATTACTCGAGTCTTCCATAGAAC TGTCACAAATGTTGGATCAGCAACATCTACTTACAAGTCAATCACGAACGCTCCAAGTGGACTTAATATCCAAATTGAACCAGATGTCCTTTCCTTCCAG TCTCTTGGGCAACAACTTTCCTTTTGTGTCACGGTTGAAGCTACGTTGGGTAAAACTGTACTGTCTGGATCTTTGGTTTGGGAAGATGGGGTGCATCAAG TAAGAAGCCCAGTTGTGGCTAATCCTTCTCATTAA
AA sequence Show only first row Show all	>Potri.010G196700.1 pacid=42797791 polypeptide=Potri.010G196700.1.p locus=Potri.010G196700 ID=Potri.010G196700.1.v4.1 annot-version=v4.1 MAGLDGVVSVFPSQKKKLHTTRSWDFMGFPKNVTRATSESDIIVAMLDTGIWPESESFNDEGYGPPPSKWKGTCQASSNFTCNNKIIGARYYHSEGKVEP GDFASPRDSEGHGTHTASTAAGRLVSEASQLGLATGTARGGVPSARIAVYKICWSDGCSDADILAAFDDAIADGVDIISLSVGGWPMDYFEDSIAIGAFH SMKNGILTSNSAGNSGPDPESISNCSPWSLSVAASTMDRKFVTPVMLGNGAIYEGISINTFEPGNIMPPFIYGGDAPNKTAGYNGSESRYCPLDSLNSTV VEGKVVLCDQISGGEEARASHAVGSIMNGDDYSDVAFSFPLPVSYLSSSDGADLLKYLNSTSEPTATIMKSIEIKDETAPFVVSFSSRGPNPITSDLLKP DLTAPGVHILAAWSEATTVTGSPGDTRVVKYNIISGTSMSCPHASGAAAYVKAFNPSWSPAAIKSALMTTASSMSSSINNDAEFAYGSGHINPAKAIDPG LVYDAGEIDYVRFLCGQGYNATQLLLITGDNSTCSAETNGTVWDLNYPSFALSAKSGKTITRVFHRTVTNVGSATSTYKSITNAPSGLNIQIEPDVLSFQ SLGQQLSFCVTVEATLGKTVLSGSLVWEDGVHQVRSPVVANPSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59100			Subtilisin-like serine endopep...		Potri.010G196700 [exp]	0	1
AT5G52390			PAR1 protein (.1)		Potri.009G040000 [exp]	1.00	0.9676
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Potri.010G131200 [exp]	2.00	0.9599
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G117001 [exp]	2.44	0.9584
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G116900 [exp]	4.00	0.9431
					Potri.019G002400 [exp]	5.91	0.9255
AT5G59100			Subtilisin-like serine endopep...		Potri.010G196900 [exp]	7.34	0.9201
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.010G073232 [exp]	8.83	0.9043
AT1G10180			unknown protein		Potri.014G195400 [exp]	11.18	0.9386
AT2G45650	MADS	AGL6	AGAMOUS-like 6 (.1)		Potri.015G134800 [exp]	17.88	0.8711
					Potri.015G120500 [exp]	19.44	0.9019

Compare expression of checked genes

Potri.010G196700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.