Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59100 598 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT4G00230 592 / 0 XSP1 xylem serine peptidase 1 (.1) AT5G59120 586 / 0 ATSBT4.13 subtilase 4.13 (.1) AT3G46850 586 / 0 Subtilase family protein (.1) AT5G59090 580 / 0 ATSBT4.12 subtilase 4.12 (.1.2.3) AT3G46840 571 / 0 Subtilase family protein (.1) AT5G59190 570 / 0 subtilase family protein (.1) AT5G03620 566 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G58830 563 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G58840 561 / 0 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G196700 [exp] 1200 / 0 AT5G59100 579 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196900 [exp] 879 / 0 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.012G133200 [exp] 707 / 0 AT5G59090 646 / 0.0 subtilase 4.12 (.1.2.3) Potri.009G038001 [exp] 637 / 0 AT3G46850 794 / 0.0 Subtilase family protein (.1) Potri.009G037900 [exp] 632 / 0 AT5G59100 777 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.003G120101 [exp] 628 / 0 AT5G59190 536 / 0.0 subtilase family protein (.1) Potri.002G151900 [exp] 620 / 0 AT4G00230 938 / 0.0 xylem serine peptidase 1 (.1) Potri.006G114500 [exp] 575 / 0 AT5G03620 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G145600 [exp] 519 / 2e-175 AT5G03620 615 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004685 [exp] 912 / 0 AT4G00230 647 / 0.0 xylem serine peptidase 1 (.1) Lus10040253 [exp] 895 / 0 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3) Lus10009867 [exp] 867 / 0 AT5G59190 629 / 0.0 subtilase family protein (.1) Lus10004683 [exp] 843 / 0 AT5G59190 600 / 0.0 subtilase family protein (.1) Lus10009868 [exp] 833 / 0 AT5G03620 605 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10004682 [exp] 670 / 0 AT5G59190 555 / 0.0 subtilase family protein (.1) Lus10004686 [exp] 660 / 0 AT5G59100 611 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10000396 [exp] 652 / 0 AT5G59190 477 / 4e-160 subtilase family protein (.1) Lus10002964 [exp] 644 / 0 AT5G59100 624 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10042555 [exp] 624 / 0 AT5G59100 603 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.010G196800.1 pacid=42797783 polypeptide=Potri.010G196800.1.p locus=Potri.010G196800 ID=Potri.010G196800.1.v4.1 annot-version=v4.1 ATGGCGAACAATTTCTCATTTTCATGTTTCCTCCTCATCAGCCTCACCTGCAGTCTGTTTAATGGCTGCCATTGCTCATCCGATGAAGACAAGAAGGTTT ATATTGTGTATATGGGTGACCGCCCAAAGAGTGATATTTCTGTATCAGCTCTTCACATCAGCATGCTACAAAACGTCGTGGGCAGTGGTGCATCAGATTC TTTGCTCTATAGCTACCATAGGAGCTTCAATGGTTTTGTTGCTAAATTGACCAAAGAGGAGAAAGAGAAAATGGCTGGCTTGGACGGTGTAGTGTCTGTG TTTCCTAGTCAGAAGAAAAAACTTCACACGACAAGATCATGGGACTTCATGGGCTTCCCCCAGAATGTTACAAGAGCAACTTCTGAAAGCGACATCATTG TGGCAATGCTTGACACAGGGATTTGGCCTGAGTCTGAAAGTTTTAATGGCGAAGGATATGGTCCGCCTCCAAGCAAATGGAAGGGCACTTGCCAGGCATC CTCCAATTTCACTTGCAACAATAAGATAATTGGAGCTCGATACTACCATAGCGAAGGAAAAGTAGATCCAGGAGACTTTGCCTCCCCAAGAGATTCAGAA GGCCATGGGACTCACACTGCTTCAACAGCAGCAGGAAGATTGGTTAGTGAGGCAAGCCTACTAGGCCTTGCTACAGGAACAGCACGAGGAGGGGTTCCCT CTGCCCGTATTGCTGCGTACAAGATATGTTGGTCTGATGGCTGCTCAGATGCCGACATTCTTGCAGCTTTTGACGATGCTATTGCAGATGGAGTTGATAT AATCTCCCTCTCAGTTGGAGGGTGGCCCATGGACTATTTTGAGGATTCAATTGCAATTGGAGCTTTCCATTCAATGAAAAATGGAATACTCACATCAAAC TCTGCTGGTAACTCAGGTCCTGATCCTGAATCAATTTCAAATTGTTCACCTTGGTCTCTGTCTGTGGCTGCTAGCACCATGGATCGAAAGTTTGTGACCC CGGTGACGTTAGGCAATGGAGCCATTTATGAGGGAATCTCCATAAATACTTTTGAGCCTGGAAATATTGTGCCCCCTTTCATTTACGGTGGAGATGCTCC AAACAAGACAGCAGGATACGACGGGTCAGAATCCAGGTATTGCCCCCTGGACTCGTTGAACAGCACTGTGGTGGAAGGGAAAGTCGTTCTTTGTGATCAG ATCAGTGGAGGGGAGGAGGCAAGAGCCAGTCATGCAGTTGGATCAATAATGAATGGTGATGATTATTCTGATGTGGCCTTCAGTTTTCCTTTACCAGTTT CATATTTGAGCTCAAGTGATGGAGCTGATCTTTTGAAGTACTTAAACTCAACTAGTGAACCCACGGCAACTATAATGAAGAGCATTGAAACAAAGGATGA AACTGCCCCATTTGTGGTTTCGTTTTCTTCACGAGGGCCTAATCCGATAACAAGTGACCTTCTCAAGCCCGACCTGACTGCCCCAGGAGTGGACATTTTG GCAGCATGGTCTGAAGCAACCACTGTAACAGGAAGCCCAGGGGATACAAGAGTGGTTAAATACAACATAATTTCCGGAACATCTATGTCTTGTCCACATG CATCCGGCGCAGCTGCTTATGTCAAGGCATTTAACCCAACATGGTCTCCTGCTGCCATTAAGTCTGCCCTAATGACAACTGCTTCTTCCATGAGTTCTAG CATTAACAATGATGCGGAGTTCGCTTATGGATCAGGCCATATAAATCCTGCAAAGGCTATTGATCCTGGTCTAGTATATGATGCTGGAGAGATTGATTAT GTTAGATTCTTGTGTGGACAAGGATATAATGCTACACAACTTCTAATAATTACCGGAGATAATAGCACATGTTCTGCAGAAACAAATGGAACTGTGTGGG ATCTAAACTACCCATCTTTCGCTCTGTCTGCCAAATCCGGGCTAACTATTACTCGAATCTTCCATAGAACTGTCACAAATGTTGGATCAGCAACATCTAC TTACAAGTCAATCACGAACGCTCCAAGTGGACTTAATATCCAAATTGAACCAGATGTCCTTTCCTTCCAGTCTCTTGGGCAACAACTTTCCTTTTGTGTC ACGGTTGAAGCAACGTTGGGTCAAACTGTACTGTCTGGATCTTTGGTTTGGGATGATGAGGTGCATCAAGTAAGAAGCCCAGTTGTGGCTAATCCTTCTC ATTAA
AA sequence Show only first row Show all	>Potri.010G196800.1 pacid=42797783 polypeptide=Potri.010G196800.1.p locus=Potri.010G196800 ID=Potri.010G196800.1.v4.1 annot-version=v4.1 MANNFSFSCFLLISLTCSLFNGCHCSSDEDKKVYIVYMGDRPKSDISVSALHISMLQNVVGSGASDSLLYSYHRSFNGFVAKLTKEEKEKMAGLDGVVSV FPSQKKKLHTTRSWDFMGFPQNVTRATSESDIIVAMLDTGIWPESESFNGEGYGPPPSKWKGTCQASSNFTCNNKIIGARYYHSEGKVDPGDFASPRDSE GHGTHTASTAAGRLVSEASLLGLATGTARGGVPSARIAAYKICWSDGCSDADILAAFDDAIADGVDIISLSVGGWPMDYFEDSIAIGAFHSMKNGILTSN SAGNSGPDPESISNCSPWSLSVAASTMDRKFVTPVTLGNGAIYEGISINTFEPGNIVPPFIYGGDAPNKTAGYDGSESRYCPLDSLNSTVVEGKVVLCDQ ISGGEEARASHAVGSIMNGDDYSDVAFSFPLPVSYLSSSDGADLLKYLNSTSEPTATIMKSIETKDETAPFVVSFSSRGPNPITSDLLKPDLTAPGVDIL AAWSEATTVTGSPGDTRVVKYNIISGTSMSCPHASGAAAYVKAFNPTWSPAAIKSALMTTASSMSSSINNDAEFAYGSGHINPAKAIDPGLVYDAGEIDY VRFLCGQGYNATQLLIITGDNSTCSAETNGTVWDLNYPSFALSAKSGLTITRIFHRTVTNVGSATSTYKSITNAPSGLNIQIEPDVLSFQSLGQQLSFCV TVEATLGQTVLSGSLVWDDEVHQVRSPVVANPSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59100			Subtilisin-like serine endopep...		Potri.010G196800 [exp]	0	1
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.007G075300 [exp]	1.41	0.9993
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Potri.003G118500 [exp]	1.41	0.9993
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.007G075100 [exp]	3.87	0.9985
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.005G088600 [exp]	5.00	0.9984
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.009G143600 [exp]	6.24	0.9976
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.015G091200 [exp]	6.32	0.9981
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Potri.010G131300 [exp]	7.48	0.9982
AT1G16060	AP2_ERF	ADAP	ARIA-interacting double AP2 do...		Potri.006G179900 [exp]	7.93	0.9978
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.004G191500 [exp]	8.94	0.9978
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Potri.016G052600 [exp]	11.31	0.9966

Compare expression of checked genes

Potri.010G196800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.