Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02030 241 / 3e-73 HD PNY, BLR, BLH9, RPL, HB-6, VAN, LSN VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) AT2G27990 226 / 3e-67 HD PNF, BLH8 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) AT2G16400 197 / 1e-57 HD BLH7 BEL1-like homeodomain 7 (.1) AT4G34610 197 / 5e-57 HD BLH6 BEL1-like homeodomain 6 (.1.2) AT1G75410 192 / 5e-55 HD BLH3 BEL1-like homeodomain 3 (.1.2) AT1G19700 191 / 9e-55 HD BEL10, BLH10 BEL1-like homeodomain 10 (.1.2.3) AT2G23760 193 / 1e-54 HD BLH4, SAW2 SAWTOOTH 2, BEL1-like homeodomain 4 (.1.2.3) AT4G36870 194 / 2e-54 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) AT5G41410 178 / 2e-49 HD BEL1 BELL 1, POX (plant homeobox) family protein (.1) AT2G27220 174 / 5e-49 HD BLH5 BEL1-like homeodomain 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G061000 [exp] 779 / 0 AT5G02030 235 / 9e-71 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Potri.009G009800 [exp] 224 / 1e-64 AT2G27990 280 / 5e-84 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Potri.009G009900 [exp] 221 / 5e-64 AT2G27990 262 / 2e-77 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Potri.004G213300 [exp] 216 / 5e-62 AT2G27990 253 / 3e-74 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Potri.016G069700 [exp] 212 / 2e-61 AT2G35940 501 / 1e-169 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.005G129500 [exp] 209 / 3e-59 AT4G36870 449 / 1e-146 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Potri.007G032700 [exp] 207 / 9e-59 AT4G36870 475 / 7e-157 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Potri.006G203000 [exp] 205 / 1e-58 AT2G35940 491 / 9e-166 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.001G216600 [exp] 204 / 3e-58 AT2G35940 377 / 7e-121 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004688 [exp] 295 / 1e-95 AT5G02030 209 / 9e-62 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Lus10040256 [exp] 294 / 1e-95 AT2G27990 204 / 3e-60 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Lus10021498 [exp] 263 / 1e-80 AT5G02030 339 / 6e-109 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Lus10022599 [exp] 259 / 2e-79 AT5G02030 339 / 7e-109 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Lus10021452 [exp] 229 / 1e-69 AT2G27990 282 / 7e-89 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Lus10016110 [exp] 224 / 1e-67 AT2G27990 282 / 1e-88 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Lus10013579 [exp] 200 / 6e-58 AT2G35940 427 / 1e-142 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10004201 [exp] 197 / 9e-56 AT2G35940 504 / 1e-170 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10029405 [exp] 195 / 3e-55 AT2G35940 478 / 9e-161 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10017481 [exp] 189 / 9e-53 AT4G34610 424 / 1e-141 BEL1-like homeodomain 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF05920 [poplar] [flax] Homeobox_KN Homeobox KN domain CL0123 [poplar] [flax] PF07526 [poplar] [flax] POX Associated with HOX
Representative CDS sequence Show only first row Show all	>Potri.010G197300.1 pacid=42798888 polypeptide=Potri.010G197300.1.p locus=Potri.010G197300 ID=Potri.010G197300.1.v4.1 annot-version=v4.1 ATGGCACAAAACTTTGAACCCTTTCATGTCCCACAACAGAACAGAAAAAACAAGCTTCGTGTCACCACTCAAACCAACCAAGAACAACAAAACCCACCAA CCCCACTATTCTCTAGACAAGCTCCTATGAACCCTTCACAATCTTCTTCGTTCTCTTCACTTCAAACCCTCAAAGACATGAACTACCAGCCCTTAACAAG TCAGGGTTTATCTTTGTGTCTCTCGTTTCAACTCGATAACCAGAGATACAATGCCGTTTCAGTTTCAGGTGATTACACTAAGCAGAATGGTGAAATGAGA AGCTCTGTCGTCCCTCTTGGTCCCTTTACTGGCTACGCTTCAATCTTGACGAGTTCAAGGTTCTTGAAACCTGCACAGCAGATTTTGGACGAAATTTGTG GTGTAATTAATTGTGCGAATGCAAACTTCCCTCTGGATGGTTTGGGTGAAAGTGAAATTACGAGAGAAAGTATTGCTTTTTTAAGTGGCGGGGTGGAGCA TCAATGGAAGAATTCAAAGCTAATATTGATGCTGGATGAGGTATACAGGAGATACAAACTATATTGCCAACAAATGCAGTCAGTTGTTGCATCATTTGAA ACTGTTGCTGGTCTTGGAAATGCAGCTCCTTATGTTTGTTATGCAATCAAAATTGTTTTGAAGCACTTTACTAGCTTGAAGAATGCCCTTTTGGATAAAA TTCAGTTCACAGGAAGAACCTTCGCTGATAGTATTGTTACCAAGGAAAAAAGTCCTAGATATGGGAAAACTGAACGAGGCATTGGAAACCAAAATCCAAC TCTGAACCTAAACTTTATTCAACATTCTGTTTGGCGATCTCACAGGGGACTTCCTGATCATGCTGTAGCTGTGCTTAAGACATGGTTGTTTGAACACTTC TTACACCCCTACCCTACAGACTCGGAAAAGCAAGCCTTGGCTCAGCAGACAGGTCTATCAAGGACTCAGGTTTCTAATTGGTTTATTAACGCAAGAGTTA GACTTTGGAAGCCAATGGTGGAAGAAGTGCACATGCTTGAATCACAGCAAACTCAAGCCCCATCTGAAACGGTCAACCAGGGTGCCAACATGCCATCTGA TTTGCCTCTCAAGAAACAGTCCCGAGCAACCTCGCACCAGAATACAAATCAAACGACACGCTCCCGCTTGCTAAATGAACTTCCTGATGTGTCTAAGCAG AGACAGGACCCAGTAAATATTTATGGCAACAATTTTTCAGGTAATTACCACACTGCTGGTGTTAGTGGAAGCAAAGGTGTTTCATTGGCACTGGGTCTTC CCCAGAATAATGGCATTGATCTATCATGGCCTCTCCCTATGAGCATACCTCACCACGTCAACGTGGAAATGATTGGCATGATGGATTCAGCACCAGCAAC AGGTTTTGAACTAGAAAAGCAGCATTTTGGGAAAGAGTAA
AA sequence Show only first row Show all	>Potri.010G197300.1 pacid=42798888 polypeptide=Potri.010G197300.1.p locus=Potri.010G197300 ID=Potri.010G197300.1.v4.1 annot-version=v4.1 MAQNFEPFHVPQQNRKNKLRVTTQTNQEQQNPPTPLFSRQAPMNPSQSSSFSSLQTLKDMNYQPLTSQGLSLCLSFQLDNQRYNAVSVSGDYTKQNGEMR SSVVPLGPFTGYASILTSSRFLKPAQQILDEICGVINCANANFPLDGLGESEITRESIAFLSGGVEHQWKNSKLILMLDEVYRRYKLYCQQMQSVVASFE TVAGLGNAAPYVCYAIKIVLKHFTSLKNALLDKIQFTGRTFADSIVTKEKSPRYGKTERGIGNQNPTLNLNFIQHSVWRSHRGLPDHAVAVLKTWLFEHF LHPYPTDSEKQALAQQTGLSRTQVSNWFINARVRLWKPMVEEVHMLESQQTQAPSETVNQGANMPSDLPLKKQSRATSHQNTNQTTRSRLLNELPDVSKQ RQDPVNIYGNNFSGNYHTAGVSGSKGVSLALGLPQNNGIDLSWPLPMSIPHHVNVEMIGMMDSAPATGFELEKQHFGKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Potri.010G197300 [exp]	0	1
AT2G27310			F-box family protein (.1)		Potri.004G199300 [exp]	9.00	0.8273
AT5G16730			Plant protein of unknown funct...		Potri.019G047600 [exp]	9.69	0.8660
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Potri.010G234700 [exp]	21.21	0.7898	CTR1.4
AT4G08810		SUB1	calcium ion binding (.1)		Potri.001G005500 [exp]	21.44	0.8214
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Potri.011G132600 [exp]	23.83	0.8421
AT5G58530			Glutaredoxin family protein (....		Potri.001G280400 [exp]	39.71	0.7973
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Potri.010G101800 [exp]	40.91	0.7862	Pt-ANN5.1
AT3G24240			Leucine-rich repeat receptor-l...		Potri.002G070900 [exp]	41.13	0.8071
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Potri.014G024700 [exp]	44.89	0.8027
					Potri.001G087701 [exp]	47.90	0.7049

Compare expression of checked genes

Potri.010G197300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.