Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1) AT3G53940 463 / 2e-164 Mitochondrial substrate carrier family protein (.1) AT2G37890 424 / 1e-149 Mitochondrial substrate carrier family protein (.1) AT4G01100 200 / 2e-61 ADNT1 adenine nucleotide transporter 1 (.1.2) AT4G26180 168 / 1e-49 Mitochondrial substrate carrier family protein (.1) AT5G51050 169 / 2e-48 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT5G61810 163 / 2e-47 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT5G01500 152 / 9e-43 TAAC thylakoid ATP/ADP carrier (.1) AT3G51870 150 / 2e-42 Mitochondrial substrate carrier family protein (.1) AT1G14560 149 / 3e-42 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G060900 [exp] 592 / 0 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.016G103300 [exp] 503 / 1e-180 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.006G091900 [exp] 498 / 1e-178 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) Potri.014G095400 [exp] 205 / 2e-63 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G168100 [exp] 205 / 2e-63 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.001G094100 [exp] 198 / 1e-60 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 196 / 5e-60 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.012G110700 [exp] 167 / 1e-47 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.006G153600 [exp] 162 / 4e-47 AT4G26180 475 / 4e-170 Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004689 [exp] 544 / 0 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1) Lus10021497 [exp] 437 / 2e-154 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10022597 [exp] 427 / 3e-150 AT3G53940 486 / 3e-173 Mitochondrial substrate carrier family protein (.1) Lus10040257 [exp] 412 / 2e-145 AT3G55640 358 / 2e-124 Mitochondrial substrate carrier family protein (.1) Lus10024344 [exp] 376 / 5e-131 AT3G53940 417 / 4e-147 Mitochondrial substrate carrier family protein (.1) Lus10012658 [exp] 301 / 8e-102 AT3G53940 327 / 5e-112 Mitochondrial substrate carrier family protein (.1) Lus10033947 [exp] 207 / 2e-64 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033948 [exp] 206 / 8e-64 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032365 [exp] 205 / 3e-63 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032364 [exp] 195 / 1e-59 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.010G197400.1 pacid=42799919 polypeptide=Potri.010G197400.1.p locus=Potri.010G197400 ID=Potri.010G197400.1.v4.1 annot-version=v4.1 ATGCAGACAGAGGCAAGAGTAGGAGTGGTGGTAGAGGGAGGGCCAAGGGCTCTTAATTCACAGCCGAAGCAGCACAAGCCATTGCAGCAACAGCATCAGC AATCGCAGATCGGAACAGTTTCGCAACTTGTAGCTGGTGGAGTTGCGGGTGCACTAAGCAAGACTTGCACTGCACCTCTTGCACGCCTCACCATACTCTT TCAGGTGCAAGGCATGCACTCAGATGTTGCAACATTGAGGAAAGCTAGTATATGGCACGAGGCTTCTCGAATTATTCGAGAGGAAGGATTTAGAGCTTTT TGGAAAGGGAATCTTGTTACAATTGCTCATCGGCTACCTTACTCGTCTGTCAACTTCTATGCATACGAGCGCTATAAAGAGTTGCTACACATGATTCCTG GCCTTGAAAGCAATAGAGAAAACATGGGCAGAGACCTGCTTGTACATTTTGTTGGTGGTGGTTTGGCAGGAATAACAGCAGCGTCTGCTACATATCCATT GGATCTTGTAAGGACACGCCTAGCAGCTCAGACAAATGTGATCTACTATAGAGGTATTTGGCATGCATTACAAACAATTACCAGAGAAGAAAGTGTTTTT GGCCTCTACAAGGGACTTGGAGCCACACTTTTGGGCGTTGGACCCAGTATAGCTATCAGCTTCTCAGTGTACGAGAGCTTGCGATCATTTTGGCAGTTGC ACAGGCCCCATGATGCTACTGTTGCCGTGAGTCTGGCTTGTGGTAGTCTTTCAGGCATTGCATCCTCAAGTGCAACGTTTCCTCTTGATCTTGTGAGACG CCGGAAGCAATTGGAAGGAGCAGGTGGACGGGCTCCTGTTTATACCACAGGTCTTCTTGGTATATTCAAGCAAATAATCCAGACTGAGGGCTTTCGGGGT CTATACAGAGGCATTATGCCTGAATACTACAAGGTTGTGCCTGGTGTTGGTATCTGTTTTATGACGTATGAGACTCTAAAATTGCTTTTAGCAGATGTTA CTCCCAAATTATAG
AA sequence Show only first row Show all	>Potri.010G197400.1 pacid=42799919 polypeptide=Potri.010G197400.1.p locus=Potri.010G197400 ID=Potri.010G197400.1.v4.1 annot-version=v4.1 MQTEARVGVVVEGGPRALNSQPKQHKPLQQQHQQSQIGTVSQLVAGGVAGALSKTCTAPLARLTILFQVQGMHSDVATLRKASIWHEASRIIREEGFRAF WKGNLVTIAHRLPYSSVNFYAYERYKELLHMIPGLESNRENMGRDLLVHFVGGGLAGITAASATYPLDLVRTRLAAQTNVIYYRGIWHALQTITREESVF GLYKGLGATLLGVGPSIAISFSVYESLRSFWQLHRPHDATVAVSLACGSLSGIASSSATFPLDLVRRRKQLEGAGGRAPVYTTGLLGIFKQIIQTEGFRG LYRGIMPEYYKVVPGVGICFMTYETLKLLLADVTPKL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55640			Mitochondrial substrate carrie...		Potri.010G197400 [exp]	0	1
AT3G23360			Protein phosphatase 2C family ...		Potri.008G168400 [exp]	4.00	0.8444
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Potri.014G006000 [exp]	8.48	0.7772
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.002G121400 [exp]	9.11	0.8520	Pt-IFS1.51
AT1G16670			Protein kinase superfamily pro...		Potri.011G112000 [exp]	24.73	0.7823
AT1G65410		ABCI13, TGD3, A...	TRIGALACTOSYLDIACYLGLYCEROL 3,...		Potri.014G137000 [exp]	35.56	0.7797
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.019G010200 [exp]	42.21	0.7640
AT2G30080		ATZIP6, ZIP6	ZIP metal ion transporter fami...		Potri.001G279300 [exp]	129.46	0.7396	ZIP6.3
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Potri.001G469800 [exp]	145.52	0.7255
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.009G031100 [exp]	184.30	0.7118	MBD5.2,MBD904
AT1G78420			RING/U-box superfamily protein...		Potri.001G378000 [exp]	213.16	0.6933

Compare expression of checked genes

Potri.010G197400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.