Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39830 688 / 0 LRD3, DAR2 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) AT4G36860 528 / 0 DAR1 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) AT1G19270 491 / 2e-170 DA1 DA1 (.1) AT5G66620 338 / 2e-109 DAR6 DA1-related protein 6 (.1) AT5G66610 332 / 1e-107 DAR7 DA1-related protein 7 (.1.2) AT5G17890 321 / 8e-97 CHS3, DAR4 CHILLING SENSITIVE 3, DA1-related protein 4 (.1) AT5G66630 302 / 1e-94 DAR5 DA1-related protein 5 (.1) AT5G66640 291 / 2e-93 DAR3 DA1-related protein 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G128900 [exp] 533 / 0 AT4G36860 696 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.002G132700 [exp] 519 / 0 AT1G19270 669 / 0.0 DA1 (.1) Potri.014G039900 [exp] 515 / 1e-180 AT1G19270 654 / 0.0 DA1 (.1) Potri.005G128800 [exp] 508 / 2e-177 AT4G36860 662 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.007G032500 [exp] 507 / 1e-176 AT4G36860 675 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.T124504 [exp] 179 / 6e-52 AT1G19270 182 / 3e-53 DA1 (.1) Potri.009G111446 [exp] 95 / 3e-23 AT2G39830 92 / 7e-23 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040258 [exp] 657 / 0 AT2G39830 653 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Lus10004690 [exp] 575 / 0 AT2G39830 560 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Lus10022486 [exp] 522 / 0 AT4G36860 679 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Lus10016791 [exp] 517 / 2e-180 AT4G36860 669 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Lus10010033 [exp] 488 / 5e-170 AT1G19270 657 / 0.0 DA1 (.1) Lus10016298 [exp] 484 / 3e-168 AT1G19270 646 / 0.0 DA1 (.1) Lus10032736 [exp] 478 / 9e-166 AT1G19270 628 / 0.0 DA1 (.1) Lus10018789 [exp] 425 / 5e-145 AT1G19270 575 / 0.0 DA1 (.1) Lus10000138 [exp] 174 / 7e-52 AT4G36860 203 / 2e-63 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00412 [poplar] [flax] LIM LIM domain CL0126 [poplar] [flax] Peptidase_MA PF12315 [poplar] [flax] DA1-like Protein DA1
Representative CDS sequence Show only first row Show all	>Potri.010G197500.1 pacid=42800158 polypeptide=Potri.010G197500.1.p locus=Potri.010G197500 ID=Potri.010G197500.1.v4.1 annot-version=v4.1 ATGGCTCCTCCTAATTCAGGTGTCCACCATATTTCTAATCCTTGCATTTATGGAGACTTTGTTTCTTCGTACGCAGAGAGAAAGTCTCGGTTTATGAAGT GGCTGGGTAAGCTTTTTAAAAGTGGGTCTAATCGCGGAGGTGCTCGTGGTGGAGTTGGCGGCCGCGCACATCCACAGATTTTAGGGGAAGAAAACGTAGT TTGGAGTGCACCAGCAAGATCTGTGGATGATCGTTCTAGAACTGGGAAGGAGCGGGGGGATGCCATTGCACTTGCTATGGCTGAAGATTGGAAGCAACCA AGTGGATGTAGTCGGGGAACAAATGATCAAGATCTAGCAAGATCGCTTCAGGATACCCTTAATTCATCTTCATTTCCTTCATATGGCACTACACAATATT GTCACAGGAATTTGAGGTTATGTAGCGGCTGCCAACGTGACATTGGCTATGGCAATTATTTGGGATGCATGGGAAAATTTTTTCATCCAGAGTGCTTTTG CTGTCGTTCTTGTGGTTACCCAATCACTGAGACCGAGTTTTCTTTGTCAGGGAATGATCCGTATCACAAGTCTTGTTTCAAAGAGTTAACTCATCCCAAA TGTGAAGTCTGCCACCAATTTATCCCTACAAACGCAGCTGGTTTGATTGAGTATAGGTGCCATCCATTTTGGTCCCAAAAGTATTGTCCATCACATGAGC ATGACAACACAGCTCGATGCTGCAGTTGTGAACGTCTGGAGTCTAGGGATGCGAGATACTATTCTTTGGAAGATGGCCGCAGCTTGTGTTTAGAATGCAT GGAATCGGCTATCATGGATACTGGTGATTGCCAACCCCTTTACCACGCCATCAGGGACTATTATGAAGGAATGAATATGAAACTGGACCAGCAAATTCCC ATGCTTCTAGTTCAAAGACAGGCACTCAATGAAGCCATTTTTGGAGAGAAGAATGGCTACCACCATATGCCCGAGACAAGGGGTCTATGTCTCTCAGAAG AGCAGACTGTCGCTAGTATACAAAAGAGACCAAGAATTGGAGGCCACCGACTGGTAGGAATGAGAACTGAACCCCGAAAGCTGACTCGGAAATGTGAAGT TACAGCTATTCTTGTTCTTTATGGTCTTCCAAGACTGCTAACGGGTGCTATTCTTGCTCACGAGTTGATGCATGGGTGGTTACGCCTCAAAGGATACCGC AATCTTAATCCTGAGGTAGAGGAAGGAATCTGTCAAGTGCTCTCATACATGTGGCTCGAATCAGAATTGCCCGGATCTAAAGGCATGCCATCCACATCCA CATCAGCAGCTTCCTCTTCCTCTTCCTCTTCCTCTTCAAAGAAGGGCGAGAAGTCCCAAGTAGAAAAAAAACTGGGTGATTTTTTCATGCATCAAATCGC CCATGATGCCACTCCAGCTTACGGGGAAGGATTCAGGTCTGCTAATGCTGCTGTCAGCAAGTATGGTTTACGTCGCACCCTGGACCACATACGCCTTACT GGCAATTTCCCATTATAA
AA sequence Show only first row Show all	>Potri.010G197500.1 pacid=42800158 polypeptide=Potri.010G197500.1.p locus=Potri.010G197500 ID=Potri.010G197500.1.v4.1 annot-version=v4.1 MAPPNSGVHHISNPCIYGDFVSSYAERKSRFMKWLGKLFKSGSNRGGARGGVGGRAHPQILGEENVVWSAPARSVDDRSRTGKERGDAIALAMAEDWKQP SGCSRGTNDQDLARSLQDTLNSSSFPSYGTTQYCHRNLRLCSGCQRDIGYGNYLGCMGKFFHPECFCCRSCGYPITETEFSLSGNDPYHKSCFKELTHPK CEVCHQFIPTNAAGLIEYRCHPFWSQKYCPSHEHDNTARCCSCERLESRDARYYSLEDGRSLCLECMESAIMDTGDCQPLYHAIRDYYEGMNMKLDQQIP MLLVQRQALNEAIFGEKNGYHHMPETRGLCLSEEQTVASIQKRPRIGGHRLVGMRTEPRKLTRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYR NLNPEVEEGICQVLSYMWLESELPGSKGMPSTSTSAASSSSSSSSSKKGEKSQVEKKLGDFFMHQIAHDATPAYGEGFRSANAAVSKYGLRRTLDHIRLT GNFPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39830		LRD3, DAR2	LATERAL ROOT DEVELOPMENT 3, DA...		Potri.010G197500 [exp]	0	1
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Potri.005G241500 [exp]	2.64	0.9290	CLV1.2
AT5G27370			Protein of unknown function (D...		Potri.013G027200 [exp]	3.87	0.9259
AT5G09220		AAP2	amino acid permease 2 (.1)		Potri.013G103500 [exp]	3.87	0.9230
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Potri.018G006000 [exp]	8.48	0.9237	Pt-VHA1.1
AT5G63710			Leucine-rich repeat protein ki...		Potri.019G001800 [exp]	12.84	0.9019
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.001G182700 [exp]	16.24	0.8875
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Potri.010G183000 [exp]	16.49	0.8873
AT5G15100		ATPIN8, PIN8	PIN-FORMED 8, Auxin efflux car...		Potri.004G124200 [exp]	16.73	0.8911
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Potri.002G175200 [exp]	17.46	0.8774	Pt-CYP78.1
					Potri.010G047000 [exp]	17.88	0.8879

Compare expression of checked genes

Potri.010G197500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.