Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05970 827 / 0 NEDD1 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 62 / 1e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT1G62020 61 / 3e-09 Coatomer, alpha subunit (.1) AT4G02730 59 / 4e-09 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT2G21390 61 / 5e-09 Coatomer, alpha subunit (.1) AT1G61210 60 / 5e-09 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G43770 59 / 6e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 59 / 6e-09 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 56 / 2e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT5G16750 54 / 3e-07 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G060700 [exp] 1200 / 0 AT5G05970 862 / 0.0 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.004G057600 [exp] 58 / 8e-09 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.010G255400 [exp] 59 / 9e-09 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 57 / 1e-08 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G074800 [exp] 58 / 3e-08 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1) Potri.015G069700 [exp] 58 / 3e-08 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1) Potri.005G148500 [exp] 56 / 5e-08 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 56 / 8e-08 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.018G020200 [exp] 56 / 1e-07 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030162 [exp] 929 / 0 AT5G05970 846 / 0.0 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10001024 [exp] 921 / 0 AT5G05970 843 / 0.0 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10040260 [exp] 864 / 0 AT5G05970 766 / 0.0 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10004693 [exp] 782 / 0 AT5G05970 714 / 0.0 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10014674 [exp] 65 / 6e-11 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 64 / 2e-10 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10013452 [exp] 61 / 3e-09 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10017890 [exp] 58 / 3e-08 AT2G47990 584 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Lus10043009 [exp] 57 / 4e-08 AT4G33270 344 / 1e-114 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10040752 [exp] 57 / 7e-08 AT1G62020 2133 / 0.0 Coatomer, alpha subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.010G197700.4 pacid=42799553 polypeptide=Potri.010G197700.4.p locus=Potri.010G197700 ID=Potri.010G197700.4.v4.1 annot-version=v4.1 ATGATCAACTTGGCGGATCCATCAATGTCGTTGCTGGCGGCGAGTGGTGGCGACACCGTGAAGCTTTTCGATGTATCAGTGGATCCAGGAGATCCATGCA CTTTGAATTACACACCAACTCCGGGTTGCGTTGTTAACTCAGTCAAGTGGAATCATACTAATTTAGTTGTGGCTAGTGCTGGAGAAGACAAGAAGATTTC GCTGTGGAGGAAAAATGGGCAGAACATGGGGACAATTCCGGTTTCTGGGACGGATAGCAGGGACAGCATTGAGGAATCTTTATCAGCTATTAGCTTTAGT AACAAGGGATCTAGATATATATGCTCTGGAGGAAGCGGTCAAGTAGTAAGAATATGGGATCTGCAGAGGAAGCGCTGTATTAAATCGTTGAGGGGTCATA CCAGTACAATAACAGGTGCTATGTACAATTGCAAAGATGAGCACCTGGCTTCCATAAGTTTGAGTGGGGATCTTATCCTTCACAACCTTGCATCTGGTGC AAGGGCGACAGAACTCAAGGACCCACACGAACAGGTACTAAGGGTTCTTGATTATTCACGAGTTAGCCGACACCTTTTAGTGACCGCAGGTGATGATGGT TCTGTACATTTGTGGGATATAACCAGTCGCAGCCCAAAGGTTTCATGGTTGAAACAACATTCTGCTCCAACTGTTGGTATTAGCTTCTCACCGTCAAATG ACAAGATAATAGCTAGTGTTGGACTGGATAAAAAACTATACACTTATGAATCAGGGTCTAGAAGGCACACATCTCTCATTTCTTACGAGGCGCCTTTTTC TTCGCTGGCTTTTAGAGATGATGGTTTGATTCTGGCAGCTGGAACCAGTAGTGGGAGGGTGGTGTTCTATGATGTTCGAGGAAAACCACAGCCTTTCACC GTTCTCCATGCTTATGGCAGTTCAGAGGCTGTTACAAGTTTATGCTGGCAAAGATCAAAACCAGTTATTGTAAATGAGAGCACCTGCACTCCTGAGATAG CTCTTTTGGGAGGTGCTGTTGATGATTCCATTCTTATGCCAGATCCTCTTCCTTCTGTAACATCATCTAGTGTTGCTCTATCCACCTCAGTATCTGGCTC TGGTAATACTGGTCGTTCAGGTCTTTCAATAGAATCATCATCTCTAACAGCAATCACTAGTGGACCTGCATCAACCATGTCCAATCTGACTTTAGCAGAG GAAACACCACATCAAAGCCATCTTTGGCCCGGAACATTGATGAAATTAAATCCTCGTTCTAGTTACAATTTCAAGGATGAAATGGAGGTGTTTTCCCCGC TTGCGGATGTTCAGCCTATCACACCCTCACTTGATAAGTTTTGGGATGATCAGGAGGGATTGAAAAAGGATAATCTATCTGTTGATAAGAAACCTTCATC GTTGTTGTTTCCTTCATCCATTAGGAGATTTCCTTTTCAAGAGGATGGGATCAATGATCATCCCATATTTGATTGGAAATCCAGTTCAACCTCAAGGCAG GATGAGGCCCGGTCTTTCACCTTACCAGGGGGATCTACTCCATCTCCATCTTCCAAGAGTGAAGATTCCTCCATCACTCCTCCAGAAGCTTGGGGTGGTG AGAGACTATCTGATAGTATTGCTCACCTACCCCAGCCACTAAATTTACCATCTCGTTTTGCGATGACTTCTGGGAGTTCAACATTAGGATCAATGTTTTC TAGTTTGCAAGATCTGTCCTCTTCAACAAATCAGACAGGTACGAGCTCATTGAATAATTCCAGCTGCAGCTTTTCAAATCTGCACACCAGAGATGTCTCT TTGAATCAGGAGACTTCAATGGGATTTCCAGAACACATTTCCTCCAGTTCCATGTCTCTGTCATTAGGTACAAAACACATCACGGAACTAGCTAGCCTTG AAGCATCTGGACCAGCATCATTAAACCAACCTCGCAGGTTTTCAACTTTTGCTGAGAGAATAAACACTACTGCTTCCTTCAGTGATGGGACATCCCTCTC AGTGGTTTCACCAAAAACAAAGAAAACAGGAGTTGAAACTAGGGAAGAGCTGCTGAATAGCATATTGTCGAGGTCTGATGCATTGGCGGTCACAGAACCA GGAATTCTTCCAGCAATGAACGGAGGAGCCACACAGCCACACAAAATCCTTCAGCCAGATACACAGCAGGGGAGTTCGTTCACGCTTCAGCTCTTCCAGC GTACTCTTGAAGAAACTCTTGATTCATTTCAGAAATCCATACATGAGGATATGAGGAGCCTTCATATAGAAATTCTTAGACAATTTCATATGCAGGAGAT GGAATTGTCCGGTGTGATGAACTCAATCCTGGAAAACCAAGCTGAACTGATGAAAGAAATCAAGTCTCTTGGGAAAGAAAACTAA
AA sequence Show only first row Show all	>Potri.010G197700.4 pacid=42799553 polypeptide=Potri.010G197700.4.p locus=Potri.010G197700 ID=Potri.010G197700.4.v4.1 annot-version=v4.1 MINLADPSMSLLAASGGDTVKLFDVSVDPGDPCTLNYTPTPGCVVNSVKWNHTNLVVASAGEDKKISLWRKNGQNMGTIPVSGTDSRDSIEESLSAISFS NKGSRYICSGGSGQVVRIWDLQRKRCIKSLRGHTSTITGAMYNCKDEHLASISLSGDLILHNLASGARATELKDPHEQVLRVLDYSRVSRHLLVTAGDDG SVHLWDITSRSPKVSWLKQHSAPTVGISFSPSNDKIIASVGLDKKLYTYESGSRRHTSLISYEAPFSSLAFRDDGLILAAGTSSGRVVFYDVRGKPQPFT VLHAYGSSEAVTSLCWQRSKPVIVNESTCTPEIALLGGAVDDSILMPDPLPSVTSSSVALSTSVSGSGNTGRSGLSIESSSLTAITSGPASTMSNLTLAE ETPHQSHLWPGTLMKLNPRSSYNFKDEMEVFSPLADVQPITPSLDKFWDDQEGLKKDNLSVDKKPSSLLFPSSIRRFPFQEDGINDHPIFDWKSSSTSRQ DEARSFTLPGGSTPSPSSKSEDSSITPPEAWGGERLSDSIAHLPQPLNLPSRFAMTSGSSTLGSMFSSLQDLSSSTNQTGTSSLNNSSCSFSNLHTRDVS LNQETSMGFPEHISSSSMSLSLGTKHITELASLEASGPASLNQPRRFSTFAERINTTASFSDGTSLSVVSPKTKKTGVETREELLNSILSRSDALAVTEP GILPAMNGGATQPHKILQPDTQQGSSFTLQLFQRTLEETLDSFQKSIHEDMRSLHIEILRQFHMQEMELSGVMNSILENQAELMKEIKSLGKEN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Potri.010G197700 [exp]	0	1
AT1G60460			unknown protein		Potri.010G041900 [exp]	1.00	0.9475
AT1G79620			Leucine-rich repeat protein ki...		Potri.006G114400 [exp]	1.73	0.9285
AT3G12180			Cornichon family protein (.1)		Potri.016G051000 [exp]	2.44	0.9297
AT5G07610			F-box family protein (.1)		Potri.003G215900 [exp]	4.24	0.9034
AT1G20670			DNA-binding bromodomain-contai...		Potri.016G141400 [exp]	4.47	0.9113
AT1G04650			unknown protein		Potri.003G175300 [exp]	6.63	0.9218
AT3G48860			unknown protein		Potri.001G065800 [exp]	8.48	0.9158
AT3G56930			DHHC-type zinc finger family p...		Potri.006G027400 [exp]	11.22	0.8959
AT4G02630			Protein kinase superfamily pro...		Potri.005G139500 [exp]	12.00	0.9070
AT1G10290		DRP2A, ADL6	DYNAMIN-RELATED PROTEIN 2A, dy...		Potri.003G001400 [exp]	13.41	0.9130	Pt-DH1.2

Compare expression of checked genes

Potri.010G197700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.