Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05987 253 / 3e-86 PRA1.A2 prenylated RAB acceptor 1.A2 (.1) AT3G11397 251 / 3e-85 PRA1.A3 prenylated RAB acceptor 1.A3 (.1) AT5G02040 247 / 9e-84 PRA1.A1 prenylated RAB acceptor 1.A1 (.1.2) AT3G11402 249 / 1e-77 Cysteine/Histidine-rich C1 domain family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G060400 [exp] 310 / 1e-108 AT3G11397 266 / 4e-91 prenylated RAB acceptor 1.A3 (.1) Potri.006G091300 [exp] 270 / 8e-93 AT5G02040 320 / 1e-112 prenylated RAB acceptor 1.A1 (.1.2) Potri.005G219100 [exp] 43 / 4e-05 AT1G55190 132 / 8e-39 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030160 [exp] 286 / 6e-99 AT5G05987 308 / 1e-107 prenylated RAB acceptor 1.A2 (.1) Lus10001021 [exp] 275 / 2e-94 AT5G05987 301 / 1e-104 prenylated RAB acceptor 1.A2 (.1) Lus10022592 [exp] 259 / 3e-88 AT5G02040 298 / 9e-104 prenylated RAB acceptor 1.A1 (.1.2) Lus10021492 [exp] 258 / 3e-88 AT5G02040 297 / 1e-103 prenylated RAB acceptor 1.A1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03208 [poplar] [flax] PRA1 PRA1 family protein
Representative CDS sequence Show only first row Show all	>Potri.010G198000.1 pacid=42797425 polypeptide=Potri.010G198000.1.p locus=Potri.010G198000 ID=Potri.010G198000.1.v4.1 annot-version=v4.1 ATGGATTGGGGAAACGTAACAGCAGAAGATCTAATCGGGGCATTAAAGGAAATAGATTGGACATCCCCTCCTCGTCCTCTCAATGAATTCCTCTCCAAAT TCACGATTCCTCGCTCTTATTCCAAGTGGAGTAGCCGCCTCAAATGCAATCTCTACTACTATCGGACAAATTACTTCATTTTGATACTACTGATTCTTGG TGTTGCTTGTATCTTAAGGCCTCTGGCGATTCTAGCCACCGCGTTGTCAGCTCTAGCCATTGCTTTCTTTAATGATAGTTTTGCAGCTAGTTTCAGTGAG AAGGTAACAAGAACTGTAAGGAAGTTTTCTCCACATTTGGCGGCAAAGATGAGACCTCCGCATATGCCTGTTATCCGTGGCCGTCCATCAGCGAAAAAAT CAGTGTACATTTGTGGCCAGCCTCGTTTATTGTTTGTCCTTTTATTCTCAGCTGCCAGTTTTCTACTGTGGTATTCTTCTGGCAGTCTTTTGTATGTTTC GTGGGCGTACGCCATTAGCATCTTTGTCACTGTTCTCCATGCAAGCTTCAGAACACCTAACCTGAAAGCACGCCTCAACACATTCCGTGAAGAATTTCGT GCAGTCTGGCGCAATTACAGTGAGCTCTAA
AA sequence Show only first row Show all	>Potri.010G198000.1 pacid=42797425 polypeptide=Potri.010G198000.1.p locus=Potri.010G198000 ID=Potri.010G198000.1.v4.1 annot-version=v4.1 MDWGNVTAEDLIGALKEIDWTSPPRPLNEFLSKFTIPRSYSKWSSRLKCNLYYYRTNYFILILLILGVACILRPLAILATALSALAIAFFNDSFAASFSE KVTRTVRKFSPHLAAKMRPPHMPVIRGRPSAKKSVYICGQPRLLFVLLFSAASFLLWYSSGSLLYVSWAYAISIFVTVLHASFRTPNLKARLNTFREEFR AVWRNYSEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Potri.010G198000 [exp]	0	1
AT1G51740		ATSYP81, SYP81,...	ORTHOLOG OF YEAST UFE1 \(UNKNO...		Potri.010G194300 [exp]	1.41	0.7394	Pt-SYP81.2
AT2G30050			transducin family protein / WD...		Potri.010G100400 [exp]	1.73	0.7323
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Potri.004G153400 [exp]	2.82	0.7496	Pt-ACT2.2
AT3G02520		GENERALREGULATO...	general regulatory factor 7 (....		Potri.004G101700 [exp]	7.00	0.7023
AT1G14000		VIK	VH1-interacting kinase (.1)		Potri.008G090800 [exp]	7.48	0.6390
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Potri.003G081800 [exp]	8.36	0.7211	RAB1.6
AT4G09830			Uncharacterised conserved prot...		Potri.002G064800 [exp]	10.58	0.6868
AT4G12340			copper ion binding (.1)		Potri.003G114200 [exp]	11.48	0.5887
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Potri.017G081500 [exp]	12.00	0.6564
AT4G21105			cytochrome-c oxidases;electron...		Potri.001G460200 [exp]	13.41	0.7128

Compare expression of checked genes

Potri.010G198000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.