Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37820 166 / 1e-49 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G37800 152 / 2e-43 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G37810 134 / 4e-38 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G37780 94 / 3e-22 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G40590 76 / 5e-16 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G44370 73 / 6e-15 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G27660 72 / 5e-14 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G17740 69 / 2e-13 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G16050 68 / 3e-13 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G44380 65 / 4e-12 Cysteine/Histidine-rich C1 domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G229500 [exp] 76 / 2e-15 AT2G27660 171 / 5e-48 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.004G209200 [exp] 74 / 3e-15 AT2G16050 278 / 1e-94 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.012G038400 [exp] 74 / 8e-15 AT2G27660 218 / 3e-65 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.004G149500 [exp] 71 / 2e-14 AT2G16050 339 / 3e-119 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.009G110500 [exp] 68 / 3e-13 AT2G16050 338 / 6e-119 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044800 [exp] 68 / 1e-12 AT5G22355 260 / 3e-77 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G057900 [exp] 67 / 2e-12 AT2G27660 145 / 2e-37 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.019G020100 [exp] 67 / 2e-12 AT2G21840 239 / 1e-67 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044732 [exp] 67 / 4e-12 AT5G22355 261 / 3e-77 Cysteine/Histidine-rich C1 domain family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017477 [exp] 68 / 4e-13 AT2G16050 340 / 4e-119 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10028723 [exp] 66 / 4e-12 AT1G20990 269 / 9e-89 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10003919 [exp] 50 / 5e-07 AT2G44380 179 / 2e-56 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10037470 [exp] 49 / 3e-06 AT2G44380 177 / 5e-52 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10016256 [exp] 45 / 2e-05 AT2G27660 107 / 8e-26 Cysteine/Histidine-rich C1 domain family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Potri.010G198200.1 pacid=42797608 polypeptide=Potri.010G198200.1.p locus=Potri.010G198200 ID=Potri.010G198200.1.v4.1 annot-version=v4.1 ATGGCGAGAATGAGCATGCCATCATCTCCAAGGCCTCAAATGTTACGACACCCCAGTCACATTCATCCTCTTTTCGAGTTCCACCTACCCGTAGGGGGTG AATTCATCTGCGATGGTTGCAGGACCTGTGGTTACGAGAAGAGCTACAGGTGCAACTATTGCAATTTTGATCTTCATGAATATTGTGCCACTTGTCCCAT AAAGCTCCGATCTGGCTTGCACGTGCATGAGTTAACACTTGTCAACCTTGTTGGCACCCGCAAAGTGTGTGACATATGTGAAGAGCGTGTTGACGGGCTC TTCTATACATGTAGCTTTTGTGACTTCAACGTGCATCCAGTTTGCACACAAATTCCGACGAAGTTGCAGCACGGCCACCTCCCTAACCATTCCTTGACAC TTCGGCAGCCAAGGATGTCCAGTTGGTGCGTGGTTTGTTGGGATGCTTGCACATCATGGCGTTACAGCTGTGATATTTGCCAAGTGGATGTGCACTTGGA CTGCGTTTATGAGCCATTTTATGAGCTCGAGAGCCCACCTCGATCTCGGTCCATGGAGGCATATATGGGTTCACCGCAATTCGAGGCATGTCTCGAGAAC CCATCTTCCTCTCGCTCCACCCGAGCGAACATGGGCCCACGACAGCTTATGGGTGGTTTCCATGGTTTTCCTATGATGGTTCCTAACCAAGGACAAATGG GCCATCTTGCAGCCTACCAGGCCCACAATGGCAATCAAGGTCGGAGGAGGAGTAAGAGGAGGAAAATTATCTCCGCTGTGGCCAAGTTAGCTGCTAATGT GCTGTTTGGTTCTGTGATTGGTGTGATGCCATTTTCTCCAGAAGACTTTTGGGGATCTTAG
AA sequence Show only first row Show all	>Potri.010G198200.1 pacid=42797608 polypeptide=Potri.010G198200.1.p locus=Potri.010G198200 ID=Potri.010G198200.1.v4.1 annot-version=v4.1 MARMSMPSSPRPQMLRHPSHIHPLFEFHLPVGGEFICDGCRTCGYEKSYRCNYCNFDLHEYCATCPIKLRSGLHVHELTLVNLVGTRKVCDICEERVDGL FYTCSFCDFNVHPVCTQIPTKLQHGHLPNHSLTLRQPRMSSWCVVCWDACTSWRYSCDICQVDVHLDCVYEPFYELESPPRSRSMEAYMGSPQFEACLEN PSSSRSTRANMGPRQLMGGFHGFPMMVPNQGQMGHLAAYQAHNGNQGRRRSKRRKIISAVAKLAANVLFGSVIGVMPFSPEDFWGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37820			Cysteine/Histidine-rich C1 dom...		Potri.010G198200 [exp]	0	1
AT3G52450		PUB22	plant U-box 22 (.1)		Potri.016G069400 [exp]	13.49	0.8553
AT2G01900			DNAse I-like superfamily prote...		Potri.012G041600 [exp]	27.76	0.8731
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Potri.006G058200 [exp]	33.94	0.8722	Pt-CYP93.2
AT1G08930		ERD6	EARLY RESPONSE TO DEHYDRATION ...		Potri.013G027700 [exp]	37.74	0.8698
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.002G258700 [exp]	45.49	0.8650	PTR2.1
AT2G23770			protein kinase family protein ...		Potri.009G010300 [exp]	56.48	0.8636
AT5G53190		SWEET3, AtSWEET...	Nodulin MtN3 family protein (....		Potri.015G021900 [exp]	68.01	0.8591
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.007G040200 [exp]	80.56	0.8570
AT4G00340		RLK4	receptor-like protein kinase 4...		Potri.013G086100 [exp]	86.85	0.8469
					Potri.009G085900 [exp]	93.33	0.8175

Compare expression of checked genes

Potri.010G198200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.