Plant FIBer expression Database

Potri.010G198300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G39805 321 / 5e-111 Integral membrane Yip1 family protein (.1.2)
AT5G27490 172 / 3e-52 Integral membrane Yip1 family protein (.1)
AT3G05280 166 / 4e-50 Integral membrane Yip1 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G060300
[exp]
466 / 3e-168 AT2G39805 335 / 1e-116 Integral membrane Yip1 family protein (.1.2)
Potri.005G033900
[exp]
169 / 5e-51 AT5G27490 468 / 2e-168 Integral membrane Yip1 family protein (.1)
Potri.013G023400
[exp]
151 / 2e-44 AT5G27490 423 / 6e-151 Integral membrane Yip1 family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001020
[exp]
326 / 4e-112 AT2G39805 322 / 1e-110 Integral membrane Yip1 family protein (.1.2)
Lus10004695
[exp]
307 / 1e-105 AT2G39805 324 / 2e-112 Integral membrane Yip1 family protein (.1.2)
Lus10030159
[exp]
260 / 8e-87 AT2G39805 256 / 6e-85 Integral membrane Yip1 family protein (.1.2)
Lus10004473
[exp]
175 / 1e-53 AT5G27490 474 / 4e-171 Integral membrane Yip1 family protein (.1)
Lus10029935
[exp]
174 / 6e-53 AT5G27490 473 / 8e-171 Integral membrane Yip1 family protein (.1)
Lus10015189
[exp]
164 / 4e-49 AT5G27490 464 / 4e-167 Integral membrane Yip1 family protein (.1)
Lus10031511
[exp]
164 / 4e-49 AT5G27490 462 / 3e-166 Integral membrane Yip1 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0112 Yip1 PF04893 Yip1 Yip1 domain
Representative CDS sequence
>Potri.010G198300.7 pacid=42799456 polypeptide=Potri.010G198300.7.p locus=Potri.010G198300 ID=Potri.010G198300.7.v4.1 annot-version=v4.1
ATGGACGAGTCTTACGATAATCTCCCTTCTAGCCATTTACTCGGTTCAGTACCTGCTGTGGTCACTGAAGAAAAAGCAAAAAATGTCGTGAATTATGAAG
TTCCTGAAGCAAATATGCAAACCTTCCCTACAAATATTAATGGAGGCGGTGGTCGCGGTTATCAAACTCTTGGAAGTCTACCTGAAGAATTTGAGCAACA
ACCACCCAACAATTGGAAGGGTATATTTAGTGTCTCATCGTACACGCAATATTTCAATGTGGATACAGATACTGTTATCAACAGACTGATGAGCTCTTTT
TATCCTTTTGGTGGTGATTTTTTCAGCAGGATTGATGCAAACCCTGATCTATACGGACCTGTCTGGGTCTCAACTACATTGATATTTGTGCTTGCTTCTC
TTGGAAACCTTGCCACCTACCTCATACAGAAACATACTGATCACAAAGCTTCTTGGAGCTTTGAAGTTGGATATGTGAATGTGGCGGTGTTTTCGGTCTA
CGGCTATGCAATTGTGGTGCCATTGGCATTTTATTTCTTACTTCGATATCTGGAATCAAATCCTAAGCTGCTACAGTTTTGGTGCATGTGGGGATATTCT
CTTTTCATCTTTGTTCCAAGCTCGTTTTTGCTGGTTATCCCAGTTGAGGTTCTTCGCTGGATCATTATACTTGCTGCTGGCATTGACTCGGGTATGTTTG
TTGCCACAAACCTAAAGACCTTAGTTGAGCCGAATGATCTTACAATCATGGTGGTTGCAGCATTCTTCTTGCAACTGGCTCTAGCAATCTTCTTTAAGGT
CTGGTTCTTCCACTAA
AA sequence
>Potri.010G198300.7 pacid=42799456 polypeptide=Potri.010G198300.7.p locus=Potri.010G198300 ID=Potri.010G198300.7.v4.1 annot-version=v4.1
MDESYDNLPSSHLLGSVPAVVTEEKAKNVVNYEVPEANMQTFPTNINGGGGRGYQTLGSLPEEFEQQPPNNWKGIFSVSSYTQYFNVDTDTVINRLMSSF
YPFGGDFFSRIDANPDLYGPVWVSTTLIFVLASLGNLATYLIQKHTDHKASWSFEVGYVNVAVFSVYGYAIVVPLAFYFLLRYLESNPKLLQFWCMWGYS
LFIFVPSSFLLVIPVEVLRWIIILAAGIDSGMFVATNLKTLVEPNDLTIMVVAAFFLQLALAIFFKVWFFH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G39805 Integral membrane Yip1 family ... Potri.010G198300
[exp]
0 1
AT1G53400 Ubiquitin domain-containing pr... Potri.011G107700
[exp]
2.44 0.7711
AT3G04090 SIP1A, SIP1;1 small and basic intrinsic prot... Potri.013G053400
[exp]
6.70 0.7498 SIP1.3
Potri.013G126000
[exp]
11.22 0.6888
AT1G24450 NFD2 NUCLEAR FUSION DEFECTIVE 2, Ri... Potri.012G078400
[exp]
12.84 0.6666
AT2G33120 ATVAMP722, SAR1 ARABIDOPSIS THALIANA VESICLE-A... Potri.012G119600
[exp]
17.88 0.7660
AT5G55290 ATPase, V0 complex, subunit E ... Potri.001G359600
[exp]
17.94 0.7228
AT4G27745 Yippee family putative zinc-bi... Potri.012G019100
[exp]
18.76 0.6680
AT5G50410 unknown protein Potri.015G096000
[exp]
19.49 0.6857
AT2G02760 ATUBC2 ubiquitin-conjugating enzyme 2... Potri.019G039200
[exp]
22.97 0.7272 Pt-UBC1.2,HUPB903
AT3G19450 CAD-C, ATCAD4 CINNAMYL ALCOHOL DEHYDROGENASE... Potri.009G095800
[exp]
25.92 0.7369 CAD,Pt-CAD4.1

Potri.010G198300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.