Plant FIBer expression Database

Pt-P5CS.1 (Potri.010G198400) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-P5CS.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G39800 1052 / 0 ATP5CS, P5CS1 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4)
AT3G55610 1048 / 0 P5CS2 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G060200
[exp]
1186 / 0 AT2G39800 1009 / 0.0 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030158
[exp]
1096 / 0 AT3G55610 1089 / 0.0 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Lus10001018
[exp]
553 / 0 AT3G55610 556 / 0.0 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Lus10001019
[exp]
520 / 0 AT3G55610 519 / 0.0 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Lus10004696
[exp]
503 / 5e-173 AT3G55610 492 / 3e-170 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Lus10004697
[exp]
495 / 4e-172 AT3G55610 515 / 4e-180 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Lus10001016
[exp]
492 / 9e-171 AT3G55610 497 / 7e-173 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Lus10040262
[exp]
490 / 2e-168 AT3G55610 480 / 3e-166 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Lus10040264
[exp]
462 / 4e-156 AT3G55610 486 / 1e-165 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Lus10040263
[exp]
456 / 7e-153 AT3G55610 481 / 1e-162 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Lus10005468
[exp]
147 / 5e-40 AT3G55610 170 / 2e-49 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00696 AA_kinase Amino acid kinase family
Representative CDS sequence
>Potri.010G198400.2 pacid=42797844 polypeptide=Potri.010G198400.2.p locus=Potri.010G198400 ID=Potri.010G198400.2.v4.1 annot-version=v4.1
ATGAACGGCACGGATCCTTCTCGTGGTTTTTTCAAAGACGTTAAGCGTCTCATTATCAAGGTTGGGACTGCTGTCGTTACTCGAACTGATGGAAGATTAG
CCCTTGGGAGATTAGGGGCACTTTGTGAGCAGATCAAAGATCTGAACTCTCTCGGATACGAAGTTATTGTGGTGACATCTGGTGCTGTTGGACTCGGTCG
CCAAAGGCTTAAATATCGAAGATTAGTTAACAGCAGCTTCGCCGATCTCCAAAAACCGCAAGTTGATTTTGATGGCAAGGCTTGTGCGGCTGTTGGACAA
AACAACCTCATGGCTTTATATGATACATTGTTTAGTCAGCTGGATGTCACATCAGCACAGCTTCTTGTGACTGATAGTGATTTCAGGGATAAAGGTTTTA
GAAAGCAACTAGACCAGACAGTGAAATCACTATTAGCTCTGAGGGTTATTCCTATATTTAATGAGAATGATGCAGTCAGTACTCGGAGAGCTCCGTATGA
GGATTCTTCTGGAATATTTTGGGATAATGACAGTTTAGCAGCTTTGCTGGCTCTGGAGCTAAAGGCTGACCTCCTTGTTCTGTTGAGTGACGTAGAGGGT
CTTTATAGTGGTCCTCCAAGTGACCCACAGTCGAAGCTGATCCATACATACATCAAGGAAATACATCAGAGTGAAATTACTTTCGGAGACAAGTCTAGGG
TGGGTCGAGGGGGCATGACAGCCAAAGTAAAAGCTGCTGTCAATGCAGCTTATGCTGGCATCCCTGTCGTTATAACCAGTGGATATGCTCCTGAAAACAT
AATGAAAGTCCTTCAAGGAGAGCGTGTTGGCACTCTCTTTCATCAAGATGCACATTTGTGGGTCCCGGTTAAAGAAGTGAGTGGCCGTGAGATGGCAGTT
GCCGCAAGGGAAAGTTCCAGAAGGCTACAGGCTTTGTCTTCGCAAGATAGGAAAAAGATTTTGTTGGGCGTAGCTGATGCCCTAGAAGCCAATGAAAAGC
TGATCAAGATTGAAAATGAAGCTGATGTTGCTGCTGCACAACAGGCTGGATTGGAGAAGTCTTTGATATCTCGGTTGGCTCTAAAGCCTGGGAAGATTGA
GAGTCTTGCGAACTCTATTCGGGTGCTTGCAAACATGGAAGACCCAATTGGTCGTGTTTTGAAGAGAACTGAGCTAGCCGATGGACTCCTCTTAGAGAAA
ACCTCATCTCCTTTAGGCGTTCTCCTGATTGTTTTCGAGTCTCGACCAGATGCACTAGTGCAGATAGCTTCGTTGGCAATCAGAAGTGGGAATGGACTCC
TCTTAAAAGGAGGAAAGGAGGCCAAGAGGTCGAATGCAATTTTGCACAAGGTAATCACTACAGCCATTCCAGACACTGTTGGTGGAAGACTTATTGGGCT
AGTGACTTCAAGAGATGAAATTCCTGATCTGCTTAAGCTTGATGATGTTATCGATCTTGTGATCCCAAGAGGCAGCAATAAACTAGTTTCTCAAATCAAG
TCATCCACTAAAATTCCTGTTCTTGGACATGCTGATGGAATTTGTCATGTGTACATGGATAAGTCTGCTAACATGGAAATGGCAAAGCGTGTTGTCTTAG
ATGCCAAAATAGATTATCCAGCAGCTTGCAATGCGATGGAAACACTTCTTGTGCACCAGGATTTGGTGCAGACCGCTGGGCTTAATGAGCTTATTGTTGA
TCTTCGCACTGAAGGTGTTACTTTATTTGGTGGACAGAGGGCATGCAAGGAGCTGAACCTTCCAGAGGCACATTCTTTACATCACGAGTACAATTCTATG
GCTTGCACTGTTGAAATTGTTGATGATGTGCATGCTGCCATCAATCATATACATCAACATGGAAGCGCGCATACTGATTGTATCATAGCAGAAGATCAGG
ATGTTGCTGAAGTCTTTCTATGTCAAGTTGACAGTGCTGCTGTTTTTCACAATGCAAGCACAAGATTTTGTGATGGGGCTCGATTTGGATTAGGTGCAGA
GGTCGGAATAAGCACAAGCAGGATTCATGCTCGAGGCCCTGTAGGTGTTGAAGGATTGTTAACAACTAAATGGATTCTTAGAGGCAGTGGACAAGTGGTG
AATGGTGATAAAGGGGTGATTTACACTCATAAGGATATGACCTTGCAATCAGTCGATTAG
AA sequence
>Potri.010G198400.2 pacid=42797844 polypeptide=Potri.010G198400.2.p locus=Potri.010G198400 ID=Potri.010G198400.2.v4.1 annot-version=v4.1
MNGTDPSRGFFKDVKRLIIKVGTAVVTRTDGRLALGRLGALCEQIKDLNSLGYEVIVVTSGAVGLGRQRLKYRRLVNSSFADLQKPQVDFDGKACAAVGQ
NNLMALYDTLFSQLDVTSAQLLVTDSDFRDKGFRKQLDQTVKSLLALRVIPIFNENDAVSTRRAPYEDSSGIFWDNDSLAALLALELKADLLVLLSDVEG
LYSGPPSDPQSKLIHTYIKEIHQSEITFGDKSRVGRGGMTAKVKAAVNAAYAGIPVVITSGYAPENIMKVLQGERVGTLFHQDAHLWVPVKEVSGREMAV
AARESSRRLQALSSQDRKKILLGVADALEANEKLIKIENEADVAAAQQAGLEKSLISRLALKPGKIESLANSIRVLANMEDPIGRVLKRTELADGLLLEK
TSSPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAKRSNAILHKVITTAIPDTVGGRLIGLVTSRDEIPDLLKLDDVIDLVIPRGSNKLVSQIK
SSTKIPVLGHADGICHVYMDKSANMEMAKRVVLDAKIDYPAACNAMETLLVHQDLVQTAGLNELIVDLRTEGVTLFGGQRACKELNLPEAHSLHHEYNSM
ACTVEIVDDVHAAINHIHQHGSAHTDCIIAEDQDVAEVFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTKWILRGSGQVV
NGDKGVIYTHKDMTLQSVD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G39800 ATP5CS, P5CS1 delta1-pyrroline-5-carboxylate... Potri.010G198400
[exp]
0 1 Pt-P5CS.1
AT4G39280 phenylalanyl-tRNA synthetase, ... Potri.004G155000
[exp]
3.74 0.6622
AT2G05710 ACO3 aconitase 3 (.1) Potri.014G153400
[exp]
6.16 0.6610
AT1G47870 E2F_DP ATE2FC, ATE2F2,... ARABIDOPSIS THALIANA HOMOLOG O... Potri.002G023400
[exp]
12.96 0.5716 Pt-E2FC.1,E2Fc
AT2G30110 ATUBA1, MOS5 MODIFIER OF SNC1 5, ubiquitin-... Potri.009G075800
[exp]
13.49 0.6032 ATUBA1.3
AT4G13780 methionine--tRNA ligase, putat... Potri.017G057700
[exp]
26.53 0.6256
AT2G03070 MED8 mediator subunit 8 (.1) Potri.010G253100
[exp]
27.74 0.6502
AT1G73720 SMU1 SUPPRESSORS OF MEC-8 AND UNC-5... Potri.011G156900
[exp]
29.39 0.5988
AT1G26190 Phosphoribulokinase / Uridine ... Potri.010G134400
[exp]
33.28 0.6516
AT3G04480 endoribonucleases (.1) Potri.019G019600
[exp]
39.49 0.6109
AT1G29880 glycyl-tRNA synthetase / glyci... Potri.003G162300
[exp]
39.94 0.6298 GLYRS.2

Potri.010G198400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.