Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53850 206 / 4e-69 Uncharacterised protein family (UPF0497) (.1) AT5G02060 184 / 1e-60 Uncharacterised protein family (UPF0497) (.1) AT3G23200 160 / 4e-51 Uncharacterised protein family (UPF0497) (.1) AT2G28370 119 / 9e-35 Uncharacterised protein family (UPF0497) (.1) AT2G37200 98 / 2e-26 Uncharacterised protein family (UPF0497) (.1) AT3G50810 77 / 3e-18 Uncharacterised protein family (UPF0497) (.1) AT4G37235 69 / 3e-15 Uncharacterised protein family (UPF0497) (.1) AT1G49405 65 / 8e-14 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G090400 [exp] 219 / 2e-74 AT3G53850 193 / 5e-64 Uncharacterised protein family (UPF0497) (.1) Potri.008G165500 [exp] 144 / 7e-45 AT3G23200 174 / 1e-56 Uncharacterised protein family (UPF0497) (.1) Potri.010G073000 [exp] 140 / 3e-43 AT3G23200 182 / 7e-60 Uncharacterised protein family (UPF0497) (.1) Potri.009G014600 [exp] 114 / 1e-32 AT2G28370 256 / 2e-88 Uncharacterised protein family (UPF0497) (.1) Potri.016G090100 [exp] 109 / 1e-30 AT2G28370 216 / 3e-72 Uncharacterised protein family (UPF0497) (.1) Potri.004G211400 [exp] 107 / 4e-30 AT2G28370 221 / 2e-74 Uncharacterised protein family (UPF0497) (.1) Potri.004G149332 [exp] 102 / 2e-28 AT3G50810 145 / 3e-45 Uncharacterised protein family (UPF0497) (.1) Potri.009G110200 [exp] 97 / 3e-26 AT3G50810 165 / 5e-53 Uncharacterised protein family (UPF0497) (.1) Potri.007G033600 [exp] 64 / 3e-13 AT4G37235 133 / 1e-40 Uncharacterised protein family (UPF0497) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004698 [exp] 244 / 3e-84 AT3G53850 213 / 6e-72 Uncharacterised protein family (UPF0497) (.1) Lus10040264 [exp] 241 / 3e-78 AT3G55610 486 / 1e-165 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10024355 [exp] 140 / 9e-44 AT3G53850 147 / 7e-47 Uncharacterised protein family (UPF0497) (.1) Lus10010881 [exp] 141 / 1e-43 AT3G53850 143 / 2e-44 Uncharacterised protein family (UPF0497) (.1) Lus10022188 [exp] 127 / 3e-38 AT3G23200 206 / 3e-69 Uncharacterised protein family (UPF0497) (.1) Lus10037399 [exp] 122 / 1e-35 AT2G28370 259 / 4e-89 Uncharacterised protein family (UPF0497) (.1) Lus10041312 [exp] 122 / 1e-35 AT2G28370 258 / 9e-89 Uncharacterised protein family (UPF0497) (.1) Lus10021469 [exp] 115 / 6e-33 AT2G28370 258 / 7e-89 Uncharacterised protein family (UPF0497) (.1) Lus10000718 [exp] 114 / 1e-32 AT2G28370 254 / 2e-87 Uncharacterised protein family (UPF0497) (.1) Lus10021202 [exp] 114 / 2e-30 AT1G06620 202 / 2e-60 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [poplar] [flax] Marvel-like PF04535 [poplar] [flax] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Potri.010G198700.1 pacid=42800199 polypeptide=Potri.010G198700.1.p locus=Potri.010G198700 ID=Potri.010G198700.1.v4.1 annot-version=v4.1 ATGAAGGAGATGTTTGGGGGTCCAGGGAAAGTGAGTGGCTTGGGATTGAGAGTAGGACAGTTTGTATTTGCAGCTGCTTCAATCGTGGTCATGGTCTCTG CTCGTGGCTTCTTTAACGCTACTGCTTTCTGCTATTTGATTGCATCAATGGGGCTTCAGCTCCTTTGGAGTTTTGGACTTGCGTGCCTTGATCTGCACGC TTTGAGATCTAAGAAAAACTTGCAGAATCCTGTCTTAGTGAGCTTATTTGTTGTTGGTGATTGGGTGACATCTATTCTATCACTTGCTGCTGCATGTGCA GCAGCTGGAGTCACCGTGCTGTTTGCAAGAGACTTGCATTACTGCAGAGCACCATACAATTTCCCATGCAGCAGGTTCCAAATCTCCATTGCTTTGGCAT TTATCTCGTGGTTTCTCCTTGCCATATCTTCTCATGTTATGTTTTGGCTGTTGGCCGCAGTATAA
AA sequence Show only first row Show all	>Potri.010G198700.1 pacid=42800199 polypeptide=Potri.010G198700.1.p locus=Potri.010G198700 ID=Potri.010G198700.1.v4.1 annot-version=v4.1 MKEMFGGPGKVSGLGLRVGQFVFAAASIVVMVSARGFFNATAFCYLIASMGLQLLWSFGLACLDLHALRSKKNLQNPVLVSLFVVGDWVTSILSLAAACA AAGVTVLFARDLHYCRAPYNFPCSRFQISIALAFISWFLLAISSHVMFWLLAAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53850			Uncharacterised protein family...		Potri.010G198700 [exp]	0	1
AT1G61670			Lung seven transmembrane recep...		Potri.016G137700 [exp]	1.73	0.8530
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Potri.004G153900 [exp]	8.48	0.8394	CAP1.1
AT3G55770	LIM	WLIM2b	WLIM2b, GATA type zinc finger ...		Potri.010G193800 [exp]	9.27	0.8782
AT2G25610			ATPase, F0/V0 complex, subunit...		Potri.018G032600 [exp]	9.48	0.8535
AT5G11460			Protein of unknown function (D...		Potri.006G245200 [exp]	9.79	0.8124
AT4G29340		PRF4	profilin 4 (.1)		Potri.018G057600 [exp]	11.48	0.8413	PRO1.3
AT5G08160		ATPK3	serine/threonine protein kinas...		Potri.015G055200 [exp]	18.43	0.8456
AT3G60550		CYCP3;2	cyclin p3;2 (.1)		Potri.014G066400 [exp]	30.46	0.8522
AT1G77350			unknown protein		Potri.019G066600 [exp]	31.93	0.8365
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Potri.016G139600 [exp]	32.24	0.8243	PAA1.4

Compare expression of checked genes

Potri.010G198700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.