Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11400 422 / 4e-150 ATEIF3G1, EIF3G1 eukaryotic translation initiation factor 3G1 (.1.2) AT5G06000 345 / 2e-119 ATEIF3G2, EIF3G2 ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITIATION FACTOR 3G2, eukaryotic translation initiation factor 3G2 (.1) AT3G14100 64 / 2e-11 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G54080 64 / 3e-11 UBP1A oligouridylate-binding protein 1A (.1.2) AT1G55310 59 / 3e-10 ATSCL33, SR33, At-SCL33 SC35-like splicing factor 33 (.1.2.3) AT3G23830 56 / 9e-10 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT3G13570 58 / 2e-09 SCL30A, At-SCL30A SC35-like splicing factor 30A (.1) AT4G34110 58 / 3e-09 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT5G64200 57 / 4e-09 ATSC35, At-SC35 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) AT5G54580 55 / 4e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G060000 [exp] 495 / 5e-179 AT3G11400 422 / 5e-150 eukaryotic translation initiation factor 3G1 (.1.2) Potri.011G130300 [exp] 59 / 1e-10 AT5G54580 161 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G139300 [exp] 61 / 2e-10 AT1G17370 580 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.002G062700 [exp] 61 / 5e-10 AT1G22760 638 / 0.0 poly(A) binding protein 3 (.1) Potri.006G208500 [exp] 57 / 6e-10 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G409800 [exp] 57 / 7e-10 AT5G54580 174 / 2e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G069000 [exp] 59 / 1e-09 AT1G17370 621 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.018G002300 [exp] 59 / 1e-09 AT1G17370 461 / 1e-161 oligouridylate binding protein 1B (.1.2) Potri.005G198500 [exp] 59 / 1e-09 AT1G22760 623 / 0.0 poly(A) binding protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028823 [exp] 436 / 1e-155 AT3G11400 459 / 9e-165 eukaryotic translation initiation factor 3G1 (.1.2) Lus10030482 [exp] 434 / 2e-154 AT3G11400 459 / 9e-165 eukaryotic translation initiation factor 3G1 (.1.2) Lus10017459 [exp] 424 / 5e-151 AT3G11400 447 / 3e-160 eukaryotic translation initiation factor 3G1 (.1.2) Lus10012833 [exp] 320 / 2e-110 AT3G11400 345 / 3e-120 eukaryotic translation initiation factor 3G1 (.1.2) Lus10027641 [exp] 63 / 7e-11 AT1G17370 569 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10011924 [exp] 62 / 9e-11 AT1G17370 578 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10014565 [exp] 58 / 7e-10 AT1G13690 277 / 9e-97 ATPase E1 (.1) Lus10004641 [exp] 57 / 7e-10 AT1G13690 277 / 8e-97 ATPase E1 (.1) Lus10008130 [exp] 59 / 1e-09 AT1G17370 664 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10014802 [exp] 58 / 3e-09 AT5G54580 176 / 2e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0511 [poplar] [flax] Retroviral_zf PF12353 [poplar] [flax] eIF3g Eukaryotic translation initiation factor 3 subunit G
Representative CDS sequence Show only first row Show all	>Potri.010G199000.2 pacid=42800140 polypeptide=Potri.010G199000.2.p locus=Potri.010G199000 ID=Potri.010G199000.2.v4.1 annot-version=v4.1 ATGTCTGTAGTAGACAAATCAGCGAAGCCAGCCAAGATGCGTTGGGGAGAACTAGACGAGGAAGACGGGGAAGATCTAGACTTTTTATTACCTCCCAAAC AAGTGATTGGGCCTGATGAGAACGGGATAAAAAAAGTGATCGAGTATAAATTCAACGACGATGGTAACAAGGTTAAAATTACTACCACCACGCGAGTTCG CAAGCTCGCCAAGGCTCGGTTGAGCAAGCGGGCCCTGGAGAGGCGAAACTGGTCCAAGTTCGGAGATGCCATTCATGAGGATGTTGGTAGCAGGCTTACT ATGGTTTCTACTGAAGAGATCTTGCTTGAAAGGCCTAGAGCTCATGGTGCCAAAGCAGATGAAACCAAGATAGCTGGAGATAACTTGGCTCAGCTAGGTA AAGGAGGGGCTGTTCTCATGGTTTGCAGAACTTGTGGTAAGAAAGGAGATCACTGGACATCACGATGCCCATACAAGGATCTTGCTCAACCACCTGAAAC CTTTATCGACAAACCCCCTGCAACGGAGACAGCTATGGCTGCCACCGGAGCAACCAAGGGTGCTTATGTCCCGCCAAGCATGAGGGCAGGTGCAGAGAGA ACTGTTGGATCAGATATGAGGCGCAGGAATGAAGAAAATTCAGTTCGGGTTACTAATTTATCAGAGGACACCAGGGAGCCTGATTTGCTTGAACTATTCC GCACATTTGGTCAAGTGAGTCGTGTCTATGTTGCTATTGATCAGAAGACCGGTGTCAGCAGGGGCTTTGGTTTTGTCAACTTTGTAAGCAAGGAAGATGC TGAGAGGGCAATAAACAAGCTCAACGGATATGGTTATGACAATCTAATTCTTCGAGTCGAATGGGCAACACCCAGAACAAACTAG
AA sequence Show only first row Show all	>Potri.010G199000.2 pacid=42800140 polypeptide=Potri.010G199000.2.p locus=Potri.010G199000 ID=Potri.010G199000.2.v4.1 annot-version=v4.1 MSVVDKSAKPAKMRWGELDEEDGEDLDFLLPPKQVIGPDENGIKKVIEYKFNDDGNKVKITTTTRVRKLAKARLSKRALERRNWSKFGDAIHEDVGSRLT MVSTEEILLERPRAHGAKADETKIAGDNLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAQPPETFIDKPPATETAMAATGATKGAYVPPSMRAGAER TVGSDMRRRNEENSVRVTNLSEDTREPDLLELFRTFGQVSRVYVAIDQKTGVSRGFGFVNFVSKEDAERAINKLNGYGYDNLILRVEWATPRTN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Potri.010G199000 [exp]	0	1
AT3G54130			Josephin family protein (.1)		Potri.016G110300 [exp]	1.41	0.8249
AT4G21105			cytochrome-c oxidases;electron...		Potri.001G460200 [exp]	1.73	0.8373
AT1G07210			Ribosomal protein S18 (.1)		Potri.006G170500 [exp]	2.44	0.8005
AT5G46020			unknown protein		Potri.011G060800 [exp]	4.47	0.7957
AT1G76860			Small nuclear ribonucleoprotei...		Potri.005G191600 [exp]	5.47	0.7872
AT5G51120		PABN1, ATPABN1	polyadenylate-binding protein ...		Potri.015G110800 [exp]	6.32	0.7688
AT4G17650			Polyketide cyclase / dehydrase...		Potri.002G126000 [exp]	6.70	0.7535
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Potri.001G374000 [exp]	7.93	0.7738	RAB11.4
AT2G30260		U2B''	U2 small nuclear ribonucleopro...		Potri.013G153700 [exp]	8.06	0.7572
AT2G35790			unknown protein		Potri.010G219400 [exp]	9.59	0.7978

Compare expression of checked genes

Potri.010G199000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.